MolNFT v2 · #166066 · protein + RNA

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

6T83: “Structure of yeast disome (di-ribosome) stalled on poly(A) tract.”. Electron microscopy at 4.0. MolNFT v2 #166066 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6T83
Type: protein + RNA
Length: 32,931 residues
Chains: 159
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 4.0
Source: Saccharomyces cerevisiae
UniProt: P32905, P33442, Q01855, P25443, P05750, P0CX35, A0A1L4AA68, P0CX37, P26786, P0CX39, O13516, Q08745, P0CX47, P48589, P05756, P06367, P0CX51, P14127, P0CX55, P07280, P38701, P0C0V8, P0C0W1, P0CX29, P0CX31, Q3E792, P39938, P35997, P41057, P0CX33, P05759, P38011, P0C0X0, P0CX45, P14126, P10664, P26321, Q02326, P05737, P17076, P05738, P41805, P0C0W9, Q12690, P36105, P05748, P26784, P05740, P0CX49, P0CX82, P0CX23, Q02753, P05749, P0CX41, P04449, P04456, P05743, P0C2H6, P02406, P05747, P14120, P0C2H8, P38061, P05744, P87262, P0CX84, P05745, P49166, P49167, P04650, P0CH08, P0CX27, P0CX25, P05317

Structure

electron microscopy · resolution 4.0 · 118 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
2b	—	rna	1771	—	—
Ab, b	—	protein	206	—	P32905
Ba	—	protein	226	—	P33442
Pb	—	protein	117	—	Q01855
Cb	—	protein	216	—	P25443
Db	—	protein	222	—	P05750
Eb	—	protein	258	—	P0CX35
Fb, g	—	protein	206	—	A0A1L4AA68
Gb	—	protein	228	—	P0CX37
Hb	—	protein	184	—	P26786
Ib	—	protein	187	—	P0CX39
Jb	—	protein	184	—	O13516
Kb, l	—	protein	92	—	Q08745
Lb	—	protein	144	—	P0CX47
Mb	—	protein	121	—	P48589
Nb, o	—	protein	150	—	P05756
Ob	—	protein	127	—	P06367
Qb, r	—	protein	141	—	P0CX51
Rb	—	protein	121	—	P14127
Sb, t	—	protein	145	—	P0CX55
Tb, u	—	protein	143	—	P07280
Ub	—	protein	100	—	P38701
Vb, w	—	protein	87	—	P0C0V8
Wb, x	—	protein	129	—	P0C0W1
Xb, y	—	protein	144	—	P0CX29
Yb, z	—	protein	134	—	P0CX31
Zb	—	protein	82	—	Q3E792
ab, 1	—	protein	97	—	P39938
bb, 2	—	protein	81	—	P35997
db, 4	—	protein	53	—	P41057
eb, 5	—	protein	60	—	P0CX33
fb, 6	—	protein	73	—	P05759
gb	—	protein	312	—	P38011
cb, 3	—	protein	63	—	P0C0X0
4b, Bb	—	rna	121	—	—
3b	—	rna	158	—	—
Ay	—	protein	251	—	P0CX45
By, Ea	—	protein	386	—	P14126
Cy, Fa	—	protein	361	—	P10664
Dy, Ga	—	protein	294	—	P26321
Ey	—	protein	167	—	Q02326
Fy	—	protein	222	—	P05737
Gy	—	protein	233	—	P17076
Hy	—	protein	191	—	P05738
Iy	—	protein	218	—	P41805
Jy, Ma	—	protein	169	—	P0C0W9
Ly	—	protein	193	—	Q12690
My	—	protein	136	—	P36105
Ny, Pa	—	protein	203	—	P05748
Oy, Qa	—	protein	197	—	P26784
Py	—	protein	183	—	P05740
Qy, B	—	protein	185	—	P0CX49
Ry	—	protein	188	—	P0CX82
Sy	—	protein	171	—	P0CX23
Ty, E	—	protein	159	—	Q02753
Uy	—	protein	100	—	P05749
Vy	—	protein	136	—	P0CX41
Wy	—	protein	126	—	P04449
Xy	—	protein	121	—	P04456
Yy	—	protein	125	—	P05743
Zy, K	—	protein	135	—	P0C2H6
ay, L	—	protein	148	—	P02406
by, M	—	protein	58	—	P05747
cy	—	protein	96	—	P14120
dy, O	—	protein	109	—	P0C2H8
ey, P	—	protein	127	—	P38061
fy, Q	—	protein	106	—	P05744
gy, R	—	protein	112	—	P87262
hb, S	—	protein	119	—	P0CX84
ib, T	—	protein	99	—	P05745
jb	—	protein	85	—	P49166
kb, V	—	protein	77	—	P49167
lb, W	—	protein	50	—	P04650
mb, X	—	protein	52	—	P0CH08
nb, Y	—	protein	25	—	—
ob	—	protein	103	—	P0CX27
pb, aa	—	protein	91	—	P0CX25
1b	—	rna	3184	—	—
6b, 8	—	rna	76	—	—
a	—	rna	1758	—	—
c	—	protein	216	—	P33442
d	—	protein	217	—	P25443
e	—	protein	223	—	P05750
f	—	protein	260	—	P0CX35
h	—	protein	218	—	P0CX37
i	—	protein	185	—	P26786
j	—	protein	188	—	P0CX39
k	—	protein	185	—	O13516
m	—	protein	146	—	P0CX47
n	—	protein	124	—	P48589
p	—	protein	128	—	P06367
q	—	protein	119	—	Q01855
s	—	protein	125	—	P14127
v	—	protein	101	—	P38701
0	—	protein	69	—	Q3E792
7	—	protein	313	—	P38011
Aa	—	rna	3127	—	—
Ca	—	rna	157	—	—
Da	—	protein	252	—	P0CX45
Ha	—	protein	157	—	Q02326
Ia	—	protein	223	—	P05737
Ja	—	protein	231	—	P17076
Ka	—	protein	190	—	P05738
La	—	protein	209	—	P41805
Na	—	protein	194	—	Q12690
Oa	—	protein	137	—	P36105
A	—	protein	175	—	P05740
C	—	protein	183	—	P0CX82
D	—	protein	172	—	P0CX23
F	—	protein	98	—	P05749
G	—	protein	134	—	P0CX41
H	—	protein	135	—	P04449
I	—	protein	120	—	P04456
J	—	protein	124	—	P05743
N	—	protein	100	—	P14120
U	—	protein	82	—	P49166
Z	—	protein	105	—	P0CX27
ba	—	protein	138	—	P05317

Compared structures

P0CX45 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L2-a (P0CX45) · a predicted model of the same protein · chain Ay against A, TM-score 0.99
P38011 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein subunit… · a predicted model of the same protein · chain 7 against A, TM-score 0.99
P14120 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L30 (P14120) · a predicted model of the same protein · chain cy against A, TM-score 0.98
P38061 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L32 (P38061) · a predicted model of the same protein · chain ey against A, TM-score 0.97
P41805 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L10 (P41805) · a predicted model of the same protein · chain Iy against A, TM-score 0.97
P05743 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L26-a (P05743) · a predicted model of the same protein · chain Yy against A, TM-score 0.97
P0CX49 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L18-a (P0CX49) · a predicted model of the same protein · chain Qy against A, TM-score 0.97
P02406 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L28 (P02406) · a predicted model of the same protein · chain ay against A, TM-score 0.96
Q02753 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L21-a (Q02753) · a predicted model of the same protein · chain Ty against A, TM-score 0.96

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