UniProt P38011
Guanine nucleotide-binding protein subunit beta-like protein (P38011)
Guanine nucleotide-binding protein subunit beta-like protein (UniProt P38011): 87 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 13 pockets. Binding sites, druggability and experiment against…
- UniProt
- P38011
- Protein
- Guanine nucleotide-binding protein subunit beta-like protein
- Experimental structures
- 87
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 13 · 12 records with a druggable one
Structures
88 records of P38011 in the MolNFT archive: 87 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1TRJ | Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome | electron microscopy | A | — | — |
| 1TRJ | Homology model of yeast RACK1 protein fitted into 11.7A cryo-EM MAP of yeast 80S ribosome | electron microscopy | A | — | — |
| 3FRX | Crystal Structure of the Yeast Orthologue of RACK1, Asc1. | x-ray diffraction | A, B, C, D | — | — |
| 3FRX | Crystal structure of the yeast orthologue of RACK1, ASC1. | x-ray diffraction | A, B, C, D | — | — |
| 3J6X | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | electron microscopy | RA | — | — |
| 3J6Y | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | electron microscopy | RA | — | — |
| 3J77 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class… | electron microscopy | RC | — | — |
| 3J78 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class… | electron microscopy | RC | — | — |
| 3RFG | Crystal structure of the yeast RACK1 dimer in space group P63 | x-ray diffraction | A, B | — | — |
| 3RFG | Crystal structure of the yeast RACK1 dimer in space group P63 | x-ray diffraction | A, B | — | — |
| 3RFH | Crystal structure of the yeast RACK1 dimer in space group P21 | x-ray diffraction | A, B, C, D | — | — |
| 3RFH | Crystal structure of the yeast RACK1 dimer in space group P21 | x-ray diffraction | A, B, C, D | — | — |
| 4U3M | Crystal structure of Anisomycin bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U3N | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U3U | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U4N | Crystal structure of Edeine bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U4O | Crystal structure of Geneticin bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U4Q | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U4R | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U4U | Crystal structure of Lycorine bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U4Y | Crystal structure of Pactamycin bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U4Z | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U50 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U51 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U52 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U53 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U55 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U56 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4U6F | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 4V6I | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces… | electron microscopy | Aa | — | — |
| 4V7R | Yeast 80S ribosome. | x-ray diffraction | AT, CT | — | — |
| 4V88 | The structure of the eukaryotic ribosome at 3.0 A resolution. | x-ray diffraction | Ag, Cg | — | — |
| 4V8Y | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | electron microscopy | A6 | — | — |
| 4V8Z | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | electron microscopy | A6 | — | — |
| 5FCI | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | x-ray diffraction | SR, sR | OHX | — |
| 5JUO | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura… | electron microscopy | WA | — | 1 (best 0.88) |
| 5JUP | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura… | electron microscopy | WA | — | — |
| 5JUS | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura… | electron microscopy | WA | — | — |
| 5JUU | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura… | electron microscopy | WA | — | — |
| 5M1J | Nonstop ribosomal complex bound with Dom34 and Hbs1 | electron microscopy | g2 | — | — |
| 5MC6 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | electron microscopy | O | — | — |
| 5MEI | Crystal structure of Agelastatin A bound to the 80S ribosome | x-ray diffraction | h, sR | OHX | — |
| 5NDG | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | x-ray diffraction | SR, sR | — | — |
| 6FAI | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | electron microscopy | g | — | 2 (best 0.83) |
| 6FAI | Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit | electron microscopy | g | — | — |
| 6GQ1 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin) | electron microscopy | AV | — | — |
| 6GQB | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | electron microscopy | AV | — | — |
| 6GQV | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | electron microscopy | AV | — | — |
| 6HHQ | Crystal structure of compound C45 bound to the yeast 80S ribosome | x-ray diffraction | h, Rb | OHX | — |
| 6I7O | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways… | electron microscopy | O, Ob | — | — |
| 6Q8Y | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | electron microscopy | O | — | — |
| 6RBE | State 2 of yeast TSR1-tap RPS20-deltaloop pre-40S particles | electron microscopy | g | — | — |
| 6T7I | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | electron microscopy | Sg | — | 1 (best 0.85) |
| 6T83 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | electron microscopy | gb, 7 | — | — |
| 6TNU | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | electron microscopy | O | — | — |
| 6WDR | Subunit joining exposes nascent pre-40S rRNA for processing and quality control | electron microscopy | g | — | — |
| 6WOO | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | electron microscopy | gg | — | — |
| 6Z6J | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | electron microscopy | Sg | — | — |
| 6ZCE | Structure of a yeast ABCE1-bound 43S pre-initiation complex | electron microscopy | h | — | — |
| 6ZU9 | Structure of a yeast ABCE1-bound 48S initiation complex | electron microscopy | h | — | — |
28 records more on the page itself.
Ligands
- OHX · osmium (III) hexammine · in 3 records
Experiment against prediction
- 8BN3 chain SR against the predicted model P38011: TM-score 1.00, RMSD 0.15 Å
- 3FRX chain C against the predicted model P38011: TM-score 0.99, RMSD 0.52 Å
- 3FRX chain C against the predicted model P38011: TM-score 0.99, RMSD 0.52 Å
- 3FRX chain D against the predicted model P38011: TM-score 0.99, RMSD 0.56 Å
- 3FRX chain D against the predicted model P38011: TM-score 0.99, RMSD 0.56 Å
- 3FRX chain A against the predicted model P38011: TM-score 0.99, RMSD 0.56 Å
- 3FRX chain A against the predicted model P38011: TM-score 0.99, RMSD 0.56 Å
- 3FRX chain B against the predicted model P38011: TM-score 0.99, RMSD 0.75 Å
- 3FRX chain B against the predicted model P38011: TM-score 0.99, RMSD 0.75 Å
- 6ZVI chain R against the predicted model P38011: TM-score 0.99, RMSD 0.66 Å
Elsewhere
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