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MolNFT v2 · #108512 · protein + RNA

Yeast 80S ribosome.

4V7R: “Yeast 80S ribosome.”. X-ray diffraction at 4. MolNFT v2 #108512 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
4V7R
Type
protein + RNA
Length
26,657 residues
Chains
139
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
4
Source
Saccharomyces cerevisiae; Saccharomyces cerevisiae S288c
UniProt
P32905, P25443, P05750, P26783, O13516, P26781, P05756, P06367, Q01855, P40213, P02407, P35271, P07280, P38701, P0C0W1, P32827, Q3E792, Q3E7X9, P41057, P38011, P53030, P05736, P14126, P10664, P26321, Q02326, P05737, P17076, P05738, P41805, P0C0W9, P36105, P05748, P26784, P05740, P07279, P05735, Q02753, P04451, P04449, P04456, P05743, P02406, P14120, P0C2H8, P38061, P39741, P49166, P04650, P02405, P49631, P17079, P05317

Structure

x-ray diffraction · resolution 4 · 74 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A1, C1—rna1789——
AA, CA—protein220—P32905
AB, CB—protein219—P25443
AC, CC—protein189—P05750
AD, CD—protein169—P26783
AE, CE—protein157—O13516
AF, CF—protein77—P26781
AG, CG—protein117—P05756
AH, CH—protein128—P06367
AI, CI—protein121—Q01855
AJ, CJ—protein134—P40213
AK, CK—protein67—P02407
AL, CL—protein120—P35271
AM, CM—protein106—P07280
AN, CN—protein111—P38701
AO, CO—protein127—P0C0W1
AP, CP—protein116—P32827
AQ—protein67—Q3E792
AR, CR—protein47—Q3E7X9
AS, CS—protein39—P41057
AT, CT—protein313—P38011
Aa, Bo, Ca—protein20——
Ab, Cb—protein105——
Ac, Cc—protein93——
Ad, Cd—protein35——
Ae, Bj, Dj—protein21——
Af—protein11——
Ah, Ch—protein41——
B1, D1—rna3206——
B2, D2—rna121——
B3, D3—rna158——
BA, DA—protein213—P53030
BB, DB—protein234—P05736
BC, DC—protein364—P14126
BD, DD—protein268—P10664
BE, DE—protein287—P26321
BF, DF—protein176—Q02326
BG, DG—protein215—P05737
BH, DH—protein173—P17076
BI, DI—protein191—P05738
BJ, DJ—protein208—P41805
BK, DK—protein165—P0C0W9
BN, DN—protein120—P36105
BO, DO—protein187—P05748
BP, DP—protein196—P26784
BQ, DQ—protein154—P05740
BR, DR—protein143—P07279
BS, DS—protein188—P05735
BT, DT—protein119—Q02753
BU, DU—protein129—P04451
BV, DV—protein59—P04449
BW, DW—protein94—P04456
BX, DX—protein107—P05743
BY, DY—protein149—P02406
BZ, DZ—protein98—P14120
Ba, Da—protein86—P0C2H8
Bb, Db—protein125—P38061
Bc, Dc—protein68—P39741
Bd, Dd—protein72—P49166
Be, De—protein48—P04650
Bf, Df—protein95—P02405
Bg, Dg—protein83—P49631
Bh, Dh—protein44——
Bi, Di—protein12——
Bk, Dk—protein16——
Bl—protein19——
Bm—protein9——
Bn—protein27——
Bp—protein8——
Bq—protein17——
Br—protein23——
CQ—protein63—Q3E792
DL—protein138—P17079
DM—protein130—P05317

Compared structures

  • P38011 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein subunit… · a predicted model of the same protein · chain CT against A, TM-score 0.97
  • P05743 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L26-a (P05743) · a predicted model of the same protein · chain BX against A, TM-score 0.94
  • P05740 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L17-a (P05740) · a predicted model of the same protein · chain BQ against A, TM-score 0.93
  • Q02753 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L21-a (Q02753) · a predicted model of the same protein · chain BT against A, TM-score 0.91
  • P14120 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L30 (P14120) · a predicted model of the same protein · chain BZ against A, TM-score 0.91
  • P38061 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L32 (P38061) · a predicted model of the same protein · chain Bb against A, TM-score 0.90
  • P05317 · AlphaFold monomer V2.0 prediction for 60S acidic ribosomal protein P0 (P05317) · a predicted model of the same protein · chain DM against A, TM-score 0.87
  • P41805 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L10 (P41805) · a predicted model of the same protein · chain BJ against A, TM-score 0.85
  • P0C2H8 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L31-a (P0C2H8) · a predicted model of the same protein · chain Ba against A, TM-score 0.81
  • P02406 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L28 (P02406) · a predicted model of the same protein · chain BY against A, TM-score 0.79
  • P49166 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L37-a (P49166) · a predicted model of the same protein · chain Bd against A, TM-score 0.78

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