UniProt P05317
60S acidic ribosomal protein P0 (P05317)
60S acidic ribosomal protein P0 (UniProt P05317): 48 experimental structures and 1 predicted model on GenesisL1. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P05317
- Protein
- 60S acidic ribosomal protein P0
- Experimental structures
- 48
- Predicted models
- 1
Structures
49 records of P05317 in the MolNFT archive: 48 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3J16 | Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners | electron microscopy | G | — | — |
| 3J16 | Models of ribosome-bound DOM34P and RLI1P and their ribosomal binding partners | electron microscopy | G | — | — |
| 3J77 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class… | electron microscopy | P0 | — | — |
| 3J78 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class… | electron microscopy | P0 | — | — |
| 4U3M | Crystal structure of Anisomycin bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U3N | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U3U | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U4N | Crystal structure of Edeine bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U4O | Crystal structure of Geneticin bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U4Q | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U4R | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U4U | Crystal structure of Lycorine bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U4Y | Crystal structure of Pactamycin bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U4Z | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U50 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U51 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U52 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U53 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U55 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U56 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4U6F | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 4V6I | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces… | electron microscopy | Bs | — | — |
| 4V7R | Yeast 80S ribosome. | x-ray diffraction | DM | — | — |
| 4V88 | The structure of the eukaryotic ribosome at 3.0 A resolution. | x-ray diffraction | Ch, Dq | — | — |
| 4V8T | Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1 | electron microscopy | q | — | — |
| 4V8Y | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | electron microscopy | Bq | — | — |
| 4V8Z | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | electron microscopy | Bq | — | — |
| 5JUP | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura… | electron microscopy | VA | — | — |
| 5JUS | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura… | electron microscopy | VA | — | — |
| 5JUU | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura… | electron microscopy | VA | — | — |
| 5MEI | Crystal structure of Agelastatin A bound to the 80S ribosome | x-ray diffraction | p0 | — | — |
| 5NDG | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 6GQ1 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin) | electron microscopy | P0 | — | — |
| 6GQB | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | electron microscopy | P0 | — | — |
| 6GQV | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | electron microscopy | P0 | — | — |
| 6HHQ | Crystal structure of compound C45 bound to the yeast 80S ribosome | x-ray diffraction | p0 | — | — |
| 6I7O | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways… | electron microscopy | BU, YU | — | — |
| 6T83 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | electron microscopy | ba | — | — |
| 6WOO | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | electron microscopy | r | — | — |
| 7TOP | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | electron microscopy | ALP0 | — | — |
| 8AGW | Yeast RQC complex in state D | electron microscopy | 0 | — | — |
| 8AGZ | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | electron microscopy | 0 | — | — |
| 8CG8 | Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the… | electron microscopy | DD | — | — |
| 8CIV | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the… | electron microscopy | DD | — | — |
| 8EUB | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site… | electron microscopy | VA | — | — |
| 8EVQ | Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I | electron microscopy | V | — | — |
| 8EVR | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site… | electron microscopy | V | — | — |
| 8K82 | Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA | electron microscopy | P0 | — | — |
| P05317 | AlphaFold monomer V2.0 prediction for 60S acidic ribosomal protein P0 (P05317) | predicted | A | — | — |
Experiment against prediction
- 8K82 chain P0 against the predicted model P05317: TM-score 0.97, RMSD 0.90 Å
- 8AGW chain 0 against the predicted model P05317: TM-score 0.96, RMSD 0.83 Å
- 8AGZ chain 0 against the predicted model P05317: TM-score 0.96, RMSD 0.83 Å
- 4U3U chain p0 against the predicted model P05317: TM-score 0.94, RMSD 1.21 Å
- 4U3N chain p0 against the predicted model P05317: TM-score 0.94, RMSD 1.12 Å
- 4U4Z chain p0 against the predicted model P05317: TM-score 0.94, RMSD 1.14 Å
- 4U4Q chain p0 against the predicted model P05317: TM-score 0.94, RMSD 1.24 Å
- 4U50 chain p0 against the predicted model P05317: TM-score 0.94, RMSD 1.24 Å
- 4U4N chain p0 against the predicted model P05317: TM-score 0.94, RMSD 1.24 Å
- 4U52 chain p0 against the predicted model P05317: TM-score 0.94, RMSD 1.25 Å
Elsewhere
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