GL1X · GenesisL1 explorer

MolNFT v2 · #192301 · protein + RNA

Human collided disome (di-ribosome) stalled on XBP1 mRNA

7QVP: “Human collided disome (di-ribosome) stalled on XBP1 mRNA”. Electron microscopy at 3.0. MolNFT v2 #192301 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7QVP
Type
protein + RNA
Length
33,648 residues
Chains
162
Method
electron microscopy
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
3.0
Source
Homo sapiens; SYNTHETIC CONSTRUCT
UniProt
A0A8B8VPA8, P39023, P36578, P46777, Q02878, P18124, P62424, P32969, Q96L21, P62913, P26373, P50914, L8Y0W1, P40429, P18621, Q07020, A0A2J8KH59, Q02543, P46778, P35268, A0A3P9HH38, F2X267, P62750, A0A5N3X333, A0A851LWS6, P46776, P47914, P62888, G7NZE1, P62910, P18077, A0A1U7T3M5, P42766, Q9Y3U8, A0A2Y9RW09, A0A1A7W9T9, A0A7N4PFJ2, A0A8C8Y9V5, P62945, J3KQN4, A0A6I9ZMF9, P46779, P08865, P61247, P15880, P23396, P62701, A0A6J0Y1Z7, P62753, P62082, P62241, A0A6J0B498, P46783, A0A8B8VW69, A0A663F1C0, A0A7L0BEC6, A0A2K6QL61, A0A4W2HV66, P08708, H0WTR0, A0A2Y9E7Q1, P60868, P63220, A0A2K5QKS6, A0A340WVW7, P62847, A0A6J3IG71, A0A6J2NCX2, A0A7J8BG50, A0A3M0JHZ8, A0A2J8WKD7, A0A2K6U587, A0A671DUR2, A0A2K6K8B0, A0A8C0T835

Structure

electron microscopy · resolution 3.0 · 132 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A4—rna14——
A5—rna11——
B4—rna76——
B5—rna75——
CC—rna75——
D5—rna73——
L1, L8—rna156——
L5—rna3611——
L6—rna3572——
L7, L9—rna120——
LA, MA—protein248—A0A8B8VPA8
LB—protein395—P39023
LC—protein364—P36578
LD, MD—protein293—P46777
LE—protein219—Q02878
LF, MF—protein225—P18124
LG—protein229—P62424
LH—protein190—P32969
LI—protein206—Q96L21
LJ—protein169—P62913
LL—protein205—P26373
LM—protein139—P50914
LN, MN—protein203—L8Y0W1
LO—protein200—P40429
LP, MP—protein153—P18621
LQ, MQ—protein187—Q07020
LR—protein176—A0A2J8KH59
LS, MS—protein175—Q02543
LT, MT—protein159—P46778
LU, MU—protein101—P35268
LV, MV—protein131—A0A3P9HH38
LW—protein115—F2X267
LX, MX—protein120—P62750
LY, MY—protein134—A0A5N3X333
LZ, MZ—protein135—A0A851LWS6
La—protein147—P46776
Lb—protein75—P47914
Lc—protein97—P62888
Ld, Md—protein107—G7NZE1
Le—protein128—P62910
Lf, Mf—protein109—P18077
Lg—protein114—A0A1U7T3M5
Lh, Mh—protein121—P42766
Li—protein102—Q9Y3U8
Lj, Mj—protein86—A0A2Y9RW09
Lk, Mk—protein69—A0A1A7W9T9
Ll, Ml—protein50—A0A7N4PFJ2
Lm—protein52—A0A8C8Y9V5
Ln, Mn—protein24—P62945
Lo—protein105—J3KQN4
Lp, Mp—protein91—A0A6I9ZMF9
Lr, Mr—protein125—P46779
MB—protein393—P39023
MC—protein365—P36578
ME—protein220—Q02878
MG—protein229—P62424
MH—protein189—P32969
MI—protein203—Q96L21
MJ—protein167—P62913
ML—protein204—P26373
MM—protein136—P50914
MO—protein201—P40429
MR—protein175—A0A2J8KH59
MW—protein115—F2X267
Ma—protein146—P46776
Mb—protein63—P47914
Mc—protein93—P62888
Me—protein127—P62910
Mg—protein110—A0A1U7T3M5
Mi—protein101—Q9Y3U8
Mm—protein50—A0A8C8Y9V5
Mo—protein98—J3KQN4
RA—protein212—P08865
RB—protein214—P61247
RC—protein217—P15880
RD—protein215—P23396
RE—protein257—P62701
RF—protein180—A0A6J0Y1Z7
RG—protein213—P62753
RH—protein176—P62082
RI—protein187—P62241
RJ—protein176—A0A6J0B498
RK—protein95—P46783
RL—protein140—A0A8B8VW69
RN, SN—protein150—A0A663F1C0
RO—protein135—A0A7L0BEC6
RP—protein127—A0A2K6QL61
RQ—protein141—A0A4W2HV66
RR—protein125—P08708
RS—protein138—H0WTR0
RT—protein141—A0A2Y9E7Q1
RU—protein100—P60868
RV, SV—protein83—P63220
RW, SW—protein129—A0A2K5QKS6
RX, SX—protein141—A0A340WVW7
RY—protein113—P62847
RZ—protein70—A0A6J3IG71
Ra, Sa—protein99—A0A6J2NCX2
Rb, Sb—protein83—A0A7J8BG50
Rc—protein61—A0A3M0JHZ8
Rd—protein52—A0A2J8WKD7
Re—protein51—A0A2K6U587
Rf—protein78—A0A671DUR2
Rg—protein283—A0A2K6K8B0
Rh—protein41—A0A8C0T835
S2—rna1714——
S3—rna1705——
SA—protein216—P08865
SB—protein213—P61247
SC—protein219—P15880
SD—protein223—P23396
SE—protein262—P62701
SF—protein187—A0A6J0Y1Z7
SG—protein231—P62753
SH—protein183—P62082
SI—protein206—P62241
SJ—protein179—A0A6J0B498
SK—protein96—P46783
SL—protein144—A0A8B8VW69
SO—protein134—A0A7L0BEC6
SP—protein128—A0A2K6QL61
SQ—protein142—A0A4W2HV66
SR—protein131—P08708
SS—protein141—H0WTR0
ST—protein143—A0A2Y9E7Q1
SU—protein101—P60868
SY—protein123—P62847
SZ—protein75—A0A6J3IG71
Sc—protein63—A0A3M0JHZ8
Sd—protein53—A0A2J8WKD7
Se—protein57—A0A2K6U587
Sg—protein308—A0A2K6K8B0

Compared structures

  • P39023 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L3 (P39023) · a predicted model of the same protein · chain LB against A, TM-score 0.99
  • P40429 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L13A (P40429) · a predicted model of the same protein · chain LO against A, TM-score 0.99
  • Q02543 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L18A (Q02543) · a predicted model of the same protein · chain LS against A, TM-score 0.99
  • Q07020 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L18 (Q07020) · a predicted model of the same protein · chain LQ against A, TM-score 0.98
  • Q02878 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L6 (Q02878) · a predicted model of the same protein · chain LE against A, TM-score 0.98
  • P62424 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L7A (P62424) · a predicted model of the same protein · chain MG against A, TM-score 0.97
  • P62888 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L30 (P62888) · a predicted model of the same protein · chain Lc against A, TM-score 0.97
  • P26373 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L13 (P26373) · a predicted model of the same protein · chain LL against A, TM-score 0.97

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