UniProt P62888
60S ribosomal protein L30 (P62888)
60S ribosomal protein L30 (UniProt P62888): 57 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 38 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P62888
- Protein
- 60S ribosomal protein L30
- Experimental structures
- 57
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 38 · 37 records with a druggable one
Structures
58 records of P62888 in the MolNFT archive: 57 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3VI6 | Crystal Structure of human ribosomal protein L30e | x-ray diffraction | A | — | — |
| 3VI6 | Crystal structure of human ribosomal protein L30E | x-ray diffraction | A | — | — |
| 4UG0 | Structure of the human 80S ribosome | electron microscopy | Lc | — | — |
| 4V6X | Structure of the human 80S ribosome | electron microscopy | Cc | — | — |
| 5LKS | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | electron microscopy | Lc | — | — |
| 6IP8 | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | electron microscopy | 2W | — | — |
| 6LQM | Cryo-EM structure of a pre-60S ribosomal subunit - state C | electron microscopy | E | — | — |
| 6LSS | Cryo-EM structure of a pre-60S ribosomal subunit - state preA | electron microscopy | E | — | — |
| 6LU8 | Cryo-EM structure of a human pre-60S ribosomal subunit - state A | electron microscopy | E | — | 1 (best 0.87) |
| 6OLE | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | electron microscopy | d | — | — |
| 6OLF | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | electron microscopy | d | — | — |
| 6OLI | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule… | electron microscopy | d | — | — |
| 6OM0 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE… | electron microscopy | d | — | 1 (best 0.88) |
| 6OM7 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and… | electron microscopy | d | — | 1 (best 0.86) |
| 6XA1 | Structure of a drug-like compound stalled human translation termination complex | electron microscopy | Lc | — | 1 (best 0.87) |
| 6Y6X | Tetracenomycin X bound to the human ribosome | electron microscopy | Lc | — | 1 (best 0.88) |
| 6Z6L | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | electron microscopy | Lc | — | 1 (best 0.87) |
| 6ZMO | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | electron microscopy | Lc | — | 1 (best 0.87) |
| 7OW7 | EIF6-bound large subunit of the human ribosome | electron microscopy | W | — | 1 (best 0.86) |
| 7QVP | Human collided disome (di-ribosome) stalled on XBP1 mRNA | electron microscopy | Lc, Mc | — | — |
| 7XNX | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | electron microscopy | Lc | — | — |
| 7XNY | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | electron microscopy | Lc | — | 1 (best 0.87) |
| 8A3D | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | electron microscopy | W | — | 1 (best 0.87) |
| 8FKZ | Human nucleolar pre-60S ribosomal subunit (State G) | electron microscopy | LO | — | 1 (best 0.87) |
| 8FL2 | Human nuclear pre-60S ribosomal subunit (State I1) | electron microscopy | LO | — | 1 (best 0.87) |
| 8FL3 | Human nuclear pre-60S ribosomal subunit (State I2) | electron microscopy | LO | — | 1 (best 0.87) |
| 8FL4 | Human nuclear pre-60S ribosomal subunit (State I3) | electron microscopy | LO | — | 1 (best 0.87) |
| 8FL7 | Human nuclear pre-60S ribosomal subunit (State J2) | electron microscopy | LO | — | 1 (best 0.87) |
| 8FL9 | Human nuclear pre-60S ribosomal subunit (State J3) | electron microscopy | LO | — | 1 (best 0.87) |
| 8FLB | Human nuclear pre-60S ribosomal subunit (State K2) | electron microscopy | LO | — | — |
| 8FLD | Human nuclear pre-60S ribosomal subunit (State L1) | electron microscopy | LO | — | — |
| 8FLE | Human nuclear pre-60S ribosomal subunit (State L2) | electron microscopy | LO | — | — |
| 8G5Y | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | electron microscopy | Lc | MG | 1 (best 0.87) |
| 8G5Z | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | electron microscopy | Lc | — | 1 (best 0.87) |
| 8G60 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | electron microscopy | Lc | — | 1 (best 0.87) |
| 8G61 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | electron microscopy | Lc | — | 1 (best 0.86) |
| 8GLP | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU… | electron microscopy | Lc | MG | 1 (best 0.87) |
| 8IDT | human nuclear pre-60S ribosomal particle - State G | electron microscopy | E | — | 1 (best 0.86) |
| 8IE3 | human nuclear pre-60S ribosomal particle - State E | electron microscopy | E | — | 1 (best 0.86) |
| 8INF | human nuclear pre-60S ribosomal particle - State F' | electron microscopy | E | — | — |
| 8IR1 | human nuclear pre-60S ribosomal particle - State A | electron microscopy | E | — | — |
| 8IR3 | human nuclear pre-60S ribosomal particle - State B' | electron microscopy | E | — | 1 (best 0.85) |
| 8JDJ | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | electron microscopy | h | — | 1 (best 0.87) |
| 8JDK | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | electron microscopy | h | — | 1 (best 0.87) |
| 8K2C | Cryo-EM structure of the human 80S ribosome with Tigecycline | electron microscopy | Lc | — | 1 (best 0.87) |
| 8OHD | 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native) | electron microscopy | Lc | — | 1 (best 0.87) |
| 8OJ5 | 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution) | electron microscopy | Lc | — | 1 (best 0.87) |
| 8OJ8 | 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native) | electron microscopy | Lc | — | 1 (best 0.87) |
| 8QYX | Human 60S ribosomal subunit | electron microscopy | W1 | — | 1 (best 0.87) |
| 8UKB | In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome | electron microscopy | Lc | — | 1 (best 0.87) |
| 8XSX | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 | electron microscopy | Lc | — | 1 (best 0.87) |
| 8Y0W | dormant ribosome with eIF5A, eEF2 and SERBP1 | electron microscopy | Lc | — | — |
| 8Y0X | Dormant ribosome with SERBP1 | electron microscopy | Lc | — | 1 (best 0.86) |
| 8YOP | Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline | electron microscopy | Lc | — | 1 (best 0.88) |
| 9C3H | Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site. | electron microscopy | Lc | — | 1 (best 0.87) |
| 9G8M | human 80S ribosome bound by a SKI2-exosome complex | electron microscopy | Lc | — | — |
| 9GMO | eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16 | electron microscopy | W | — | 1 (best 0.87) |
| P62888 | AlphaFold monomer V2.0 prediction for 60S ribosomal protein L30 (P62888) | predicted | A | — | 1 (best 0.24) |
Ligands
- MG · Magnesium ion · in 2 records
Experiment against prediction
- 8QYX chain W1 against the predicted model P62888: TM-score 0.99, RMSD 0.38 Å
- 7XNX chain Lc against the predicted model P62888: TM-score 0.99, RMSD 0.44 Å
- 7XNY chain Lc against the predicted model P62888: TM-score 0.99, RMSD 0.44 Å
- 8OHD chain Lc against the predicted model P62888: TM-score 0.98, RMSD 0.47 Å
- 8G61 chain Lc against the predicted model P62888: TM-score 0.98, RMSD 0.47 Å
- 8OJ5 chain Lc against the predicted model P62888: TM-score 0.98, RMSD 0.50 Å
- 8YOP chain Lc against the predicted model P62888: TM-score 0.98, RMSD 0.51 Å
- 8OJ8 chain Lc against the predicted model P62888: TM-score 0.98, RMSD 0.50 Å
- 8K2C chain Lc against the predicted model P62888: TM-score 0.98, RMSD 0.57 Å
- 8G5Y chain Lc against the predicted model P62888: TM-score 0.98, RMSD 0.75 Å
Elsewhere
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