UniProt P40429
60S ribosomal protein L13a (P40429)
60S ribosomal protein L13a (UniProt P40429): 75 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 138 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P40429
- Protein
- 60S ribosomal protein L13a
- Experimental structures
- 75
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 138 · 62 records with a druggable one
Structures
76 records of P40429 in the MolNFT archive: 75 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4UG0 | Structure of the human 80S ribosome | electron microscopy | LO | — | — |
| 4V6X | Structure of the human 80S ribosome | electron microscopy | CO | — | — |
| 5LKS | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | electron microscopy | LO | MG | — |
| 6IP8 | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | electron microscopy | 2I | — | — |
| 6LQM | Cryo-EM structure of a pre-60S ribosomal subunit - state C | electron microscopy | V | MG | — |
| 6LSS | Cryo-EM structure of a pre-60S ribosomal subunit - state preA | electron microscopy | V | — | — |
| 6LU8 | Cryo-EM structure of a human pre-60S ribosomal subunit - state A | electron microscopy | V | MG | 1 (best 0.86) |
| 6OLE | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | electron microscopy | P | — | — |
| 6OLF | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | electron microscopy | P | — | 3 (best 0.88) |
| 6OLI | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule… | electron microscopy | P | — | — |
| 6OM0 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE… | electron microscopy | P | — | 2 (best 0.88) |
| 6OM7 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and… | electron microscopy | P | — | 2 (best 0.89) |
| 6QZP | High-resolution cryo-EM structure of the human 80S ribosome | electron microscopy | LO | MG | 3 (best 0.88) |
| 6XA1 | Structure of a drug-like compound stalled human translation termination complex | electron microscopy | LO | — | 2 (best 0.88) |
| 6Y6X | Tetracenomycin X bound to the human ribosome | electron microscopy | LO | MG | 1 (best 0.84) |
| 6Z6L | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | electron microscopy | LO | MG | 1 (best 0.87) |
| 6ZMO | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | electron microscopy | LO | MG | 2 (best 0.88) |
| 7F5S | human delta-METTL18 60S ribosome | electron microscopy | LO | MG | 3 (best 0.88) |
| 7OW7 | EIF6-bound large subunit of the human ribosome | electron microscopy | I | MG, K | 3 (best 0.89) |
| 7QVP | Human collided disome (di-ribosome) stalled on XBP1 mRNA | electron microscopy | LO, MO | — | — |
| 7XNX | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | electron microscopy | LO | MG | 1 (best 0.87) |
| 7XNY | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | electron microscopy | LO | MG | 3 (best 0.88) |
| 8A3D | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | electron microscopy | I | MG, K | 4 (best 0.87) |
| 8FKQ | Human nucleolar pre-60S ribosomal subunit (State A2) | electron microscopy | L7 | MG | 3 (best 0.87) |
| 8FKR | Human nucleolar pre-60S ribosomal subunit (State B1) | electron microscopy | L7 | MG | 2 (best 0.84) |
| 8FKS | Human nucleolar pre-60S ribosomal subunit (State B2) | electron microscopy | L7 | MG | 3 (best 0.86) |
| 8FKU | Human nucleolar pre-60S ribosomal subunit (State C2) | electron microscopy | L7 | MG | 5 (best 0.86) |
| 8FKV | Human nucleolar pre-60S ribosomal subunit (State D1) | electron microscopy | L7 | MG | 1 (best 0.84) |
| 8FKW | Human nucleolar pre-60S ribosomal subunit (State D2) | electron microscopy | L7 | MG | 4 (best 0.88) |
| 8FKX | Human nucleolar pre-60S ribosomal subunit (State E) | electron microscopy | L7 | MG | 4 (best 0.87) |
| 8FKZ | Human nucleolar pre-60S ribosomal subunit (State G) | electron microscopy | L7 | MG | 4 (best 0.89) |
| 8FL0 | Human nucleolar pre-60S ribosomal subunit (State H) | electron microscopy | L7 | MG | 4 (best 0.88) |
| 8FL2 | Human nuclear pre-60S ribosomal subunit (State I1) | electron microscopy | L7 | MG | 1 (best 0.88) |
| 8FL3 | Human nuclear pre-60S ribosomal subunit (State I2) | electron microscopy | L7 | MG | 1 (best 0.86) |
| 8FL4 | Human nuclear pre-60S ribosomal subunit (State I3) | electron microscopy | L7 | MG | 2 (best 0.86) |
| 8FL6 | Human nuclear pre-60S ribosomal subunit (State J1) | electron microscopy | L7 | MG | 1 (best 0.88) |
| 8FL7 | Human nuclear pre-60S ribosomal subunit (State J2) | electron microscopy | L7 | MG | 1 (best 0.88) |
| 8FL9 | Human nuclear pre-60S ribosomal subunit (State J3) | electron microscopy | L7 | MG | 2 (best 0.88) |
| 8FLB | Human nuclear pre-60S ribosomal subunit (State K2) | electron microscopy | L7 | MG | — |
| 8FLC | Human nuclear pre-60S ribosomal subunit (State K3) | electron microscopy | L7 | MG | 1 (best 0.88) |
| 8FLD | Human nuclear pre-60S ribosomal subunit (State L1) | electron microscopy | L7 | MG | — |
| 8FLE | Human nuclear pre-60S ribosomal subunit (State L2) | electron microscopy | L7 | MG | — |
| 8FLF | Human nuclear pre-60S ribosomal subunit (State L3) | electron microscopy | L7 | MG | 1 (best 0.88) |
| 8G5Y | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | electron microscopy | LO | MG | 2 (best 0.88) |
| 8G5Z | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | electron microscopy | LO | MG | 1 (best 0.88) |
| 8G60 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | electron microscopy | LO | MG | 2 (best 0.87) |
| 8G61 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | electron microscopy | LO | MG | 2 (best 0.88) |
| 8GLP | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU… | electron microscopy | LO | SPD, MG | 1 (best 0.87) |
| 8IDT | human nuclear pre-60S ribosomal particle - State G | electron microscopy | V | — | 2 (best 0.88) |
| 8IDY | human nuclear pre-60S ribosomal particle - State F | electron microscopy | V | — | 3 (best 0.89) |
| 8IE3 | human nuclear pre-60S ribosomal particle - State E | electron microscopy | V | — | 2 (best 0.88) |
| 8IFD | Dibekacin-added human 80S ribosome | electron microscopy | 2I | MG | 3 (best 0.87) |
| 8INE | human nuclear pre-60S ribosomal particle - State G' | electron microscopy | V | — | 1 (best 0.86) |
| 8INF | human nuclear pre-60S ribosomal particle - State F' | electron microscopy | V | — | 2 (best 0.88) |
| 8INK | human nuclear pre-60S ribosomal particle - State D | electron microscopy | V | — | 1 (best 0.85) |
| 8IR1 | human nuclear pre-60S ribosomal particle - State A | electron microscopy | V | — | 5 (best 0.86) |
| 8IR3 | human nuclear pre-60S ribosomal particle - State B' | electron microscopy | V | — | 2 (best 0.85) |
| 8JDJ | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | electron microscopy | T | MG | 1 (best 0.87) |
| 8JDK | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | electron microscopy | T | MG | — |
| 8JDL | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated… | electron microscopy | T | MG | 1 (best 0.86) |
16 records more on the page itself.
Ligands
Experiment against prediction
- 8A3D chain I against the predicted model P40429: TM-score 0.99, RMSD 0.48 Å
- 9C3H chain LY against the predicted model P40429: TM-score 0.99, RMSD 0.48 Å
- 8G60 chain LO against the predicted model P40429: TM-score 0.99, RMSD 0.49 Å
- 8G5Y chain LO against the predicted model P40429: TM-score 0.99, RMSD 0.49 Å
- 9GMO chain I against the predicted model P40429: TM-score 0.99, RMSD 0.50 Å
- 7F5S chain LO against the predicted model P40429: TM-score 0.99, RMSD 0.54 Å
- 7OW7 chain I against the predicted model P40429: TM-score 0.99, RMSD 0.57 Å
- 7QVP chain LO against the predicted model P40429: TM-score 0.99, RMSD 0.58 Å
- 8K2C chain LO against the predicted model P40429: TM-score 0.99, RMSD 0.73 Å
- 8YOP chain LO against the predicted model P40429: TM-score 0.99, RMSD 0.74 Å
Elsewhere
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