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MolNFT v1 · #144131 · protein + RNA

S. cerevisiae spliceosomal post-catalytic P complex

6BK8: “S. cerevisiae spliceosomal post-catalytic P complex”. Electron microscopy, 4 ligands (IHP, GTP, ZN). MolNFT v1 #144131 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6BK8
Type
protein + RNA
Length
10,643 residues
Chains
46
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P33334, P36048, Q12417, P28004, P38241, Q12046, Q03772, P25337, Q03375, P53333, P40968, P33411, Q02775, P24384, P53277, Q03654, Q12309, Q04048, Q06217, P54999, Q12330, P40204, P40018, P43321, Q02260, P40567, Q08963, P32523, Q06091
Ligands
IHP, GTP, ZN, MG

Structure

electron microscopy · 43 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
2—rna135——
5—rna103——
6—rna102——
e—rna34——
i—rna59——
A—protein1960—P33334
B—protein899—P36048
D—protein359—Q12417
E—protein186—P28004
F—protein199—P38241
G—protein255—Q12046
H—protein70—Q03772
I—protein156—P25337
K—protein82—Q03375
L—protein412—P53333
M—protein326—P40968
N—protein167—P33411
O—protein229—Q02775
P—protein653—P24384
R—protein101—P53277
S—protein238—Q03654
T—protein483—Q12309
U—protein637—Q04048
X—protein219——
Y—protein16——
a—protein94—Q06217
b, m—protein72—P54999
c, l—protein75—Q12330
d, n—protein69—P40204
f—protein80—P40018
g—protein82—P43321
h—protein82—Q02260
k—protein78—P40018
o—protein78—P43321
p—protein79—Q02260
q—protein93—Q06217
r—protein84—P40567
s—protein164—Q08963
u—protein435—P32523
v—protein118—P32523
w—protein438—P32523
x—protein116—P32523
y—protein110—Q06091

Ligands and binding sites

  • IHP · Inositol hexakisphosphate · ligand · chains A, O
  • GTP · Guanosine-5'-triphosphate · ligand · chains B
  • ZN · Zinc ion · metal · 7 copies · chains F, G, I, O
  • MG · Magnesium ion · metal · 5 copies · chains 6, e, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6BK8 · S. cerevisiae spliceosomal post-catalytic P complex · the same entry in another collection · chain G against G, TM-score 1.00

Analyse

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