UniProt Q06217
Small nuclear ribonucleoprotein Sm D2 (Q06217)
Small nuclear ribonucleoprotein Sm D2 (UniProt Q06217): 61 experimental structures and 1 predicted model on GenesisL1, 90 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q06217
- Protein
- Small nuclear ribonucleoprotein Sm D2
- Experimental structures
- 61
- Predicted models
- 1
- Pockets
- 90 · 42 records with a druggable one
Structures
62 records of Q06217 in the MolNFT archive: 61 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3JCM | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | electron microscopy | U, Q | — | 1 (best 0.75) |
| 3JCM | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snrnp | electron microscopy | U, Q | — | 1 (best 0.75) |
| 5GAM | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | electron microscopy | j | — | 2 (best 0.77) |
| 5GAM | Foot region of the yeast spliceosomal U4/U6.U5 tri-snrnp | electron microscopy | j | — | 2 (best 0.77) |
| 5GAN | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snrnp at 3.7 ångström | electron microscopy | m, j | — | 1 (best 0.81) |
| 5GAO | Head region of the yeast spliceosomal U4/U6.U5 tri-snRNP | electron microscopy | m | — | 4 (best 0.82) |
| 5GAO | Head region of the yeast spliceosomal U4/U6.U5 tri-snrnp | electron microscopy | m | — | 4 (best 0.82) |
| 5GM6 | Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution | electron microscopy | g | — | — |
| 5GMK | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | electron microscopy | g, e | — | 1 (best 0.80) |
| 5GMK | Cryo-EM structure of the catalytic step I spliceosome (C complex) at 3.4 ångström resolution | electron microscopy | g, e | — | 1 (best 0.80) |
| 5LJ3 | Structure of the core of the yeast spliceosome immediately after branching | electron microscopy | j, m | — | 3 (best 0.80) |
| 5LJ3 | Structure of the core of the yeast spliceosome immediately after branching | electron microscopy | j, m | — | 3 (best 0.80) |
| 5LJ5 | Overall structure of the yeast spliceosome immediately after branching. | electron microscopy | j, m | — | 1 (best 0.83) |
| 5LJ5 | Overall structure of the yeast spliceosome immediately after branching. | electron microscopy | j, m | — | 1 (best 0.83) |
| 5LQW | yeast activated spliceosome | electron microscopy | j | — | — |
| 5LQW | Yeast activated spliceosome | electron microscopy | j | — | — |
| 5MPS | Structure of a spliceosome remodeled for exon ligation | electron microscopy | j | — | — |
| 5MPS | Structure of a spliceosome remodeled for exon ligation | electron microscopy | j | — | — |
| 5MQ0 | Structure of a spliceosome remodeled for exon ligation | electron microscopy | j, m | — | — |
| 5MQ0 | Structure of a spliceosome remodeled for exon ligation | electron microscopy | j, m | — | — |
| 5NRL | Structure of a pre-catalytic spliceosome | electron microscopy | i, m, u | — | 3 (best 0.84) |
| 5WSG | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | electron microscopy | g, W | — | — |
| 5WSG | Cryo-EM structure of the catalytic step II spliceosome (C* complex) at 4.0 ångström resolution | electron microscopy | g, W | — | — |
| 5Y88 | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5… | electron microscopy | g, n | — | 1 (best 0.80) |
| 5Y88 | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.CEREVISIAE at 3.5… | electron microscopy | g, n | — | 1 (best 0.80) |
| 5YLZ | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | electron microscopy | g, n | — | — |
| 5YLZ | Cryo-EM structure of the post-catalytic spliceosome from saccharomyces cerevisiae at 3.6 ångström | electron microscopy | g, n | — | — |
| 5ZWM | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom… | electron microscopy | c, R, n | — | 1 (best 0.80) |
| 5ZWN | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 angstrom (Part II: U1… | electron microscopy | c | — | 3 (best 0.87) |
| 5ZWN | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 ångström (part II: U1… | electron microscopy | c | — | 3 (best 0.87) |
| 5ZWO | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | electron microscopy | c, R, n | — | 2 (best 0.85) |
| 5ZWO | Cryo-EM structure of the yeast B complex at average resolution of 3.9 ångström | electron microscopy | c, R, n | — | 2 (best 0.85) |
| 6BK8 | S. cerevisiae spliceosomal post-catalytic P complex | electron microscopy | a, q | — | — |
| 6BK8 | S. cerevisiae spliceosomal post-catalytic P complex | electron microscopy | a, q | — | — |
| 6EXN | Post-catalytic P complex spliceosome with 3' splice site docked | electron microscopy | j, m | — | 2 (best 0.80) |
| 6EXN | Post-catalytic P complex spliceosome with 3' splice site docked | electron microscopy | j, m | — | 2 (best 0.80) |
| 6G90 | Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2) | electron microscopy | i, u | — | 3 (best 0.88) |
| 6G90 | Prespliceosome structure provides insight into spliceosome assembly and regulation (MAP A2) | electron microscopy | i, u | — | 3 (best 0.88) |
| 6J6G | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | electron microscopy | g, e | — | 1 (best 0.79) |
| 6J6G | Cryo-EM structure of the yeast B*-A2 complex at an average resolution of 3.2 ångström | electron microscopy | g, e | — | 1 (best 0.79) |
| 6J6H | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | electron microscopy | g, e | — | 2 (best 0.79) |
| 6J6H | Cryo-EM structure of the yeast B*-A1 complex at an average resolution of 3.6 ångström | electron microscopy | g, e | — | 2 (best 0.79) |
| 6J6N | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | electron microscopy | g, e | — | 2 (best 0.80) |
| 6J6N | Cryo-EM structure of the yeast B*-B1 complex at an average resolution of 3.86 ångström | electron microscopy | g, e | — | 2 (best 0.80) |
| 6J6Q | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | electron microscopy | g, e | — | 1 (best 0.80) |
| 6J6Q | Cryo-EM structure of the yeast B*-B2 complex at an average resolution of 3.7 ångström | electron microscopy | g, e | — | 1 (best 0.80) |
| 6N7P | S. cerevisiae spliceosomal E complex (UBC4) | electron microscopy | M | — | 3 (best 0.86) |
| 6N7P | S. cerevisiae spliceosomal E complex (UBC4) | electron microscopy | M | — | — |
| 6N7R | Saccharomyces cerevisiae spliceosomal E complex (ACT1) | electron microscopy | M | — | 3 (best 0.85) |
| 6N7R | Saccharomyces cerevisiae spliceosomal E complex (ACT1) | electron microscopy | M | — | — |
| 6N7X | S. cerevisiae U1 snRNP | electron microscopy | M | — | 4 (best 0.85) |
| 6N7X | S. cerevisiae U1 snrnp | electron microscopy | M | — | — |
| 7B9V | Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound | electron microscopy | j, m | — | 1 (best 0.84) |
| 7OQB | The U2 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) | electron microscopy | u | — | 2 (best 0.85) |
| 7OQB | The U2 part of saccharomyces cerevisiae spliceosomal pre-a complex (delta bs-a ACT1) | electron microscopy | u | — | — |
| 7OQC | The U1 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) | electron microscopy | i | — | 3 (best 0.75) |
| 7OQC | The U1 part of saccharomyces cerevisiae spliceosomal pre-a complex (delta bs-a ACT1) | electron microscopy | i | — | — |
| 7OQE | Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) | electron microscopy | i, u | — | 5 (best 0.84) |
| 7OQE | Saccharomyces cerevisiae spliceosomal pre-a complex (delta bs-a ACT1) | electron microscopy | i, u | — | — |
| 8W2O | Yeast U1 snRNP with humanized U1C Zinc-Finger domain | electron microscopy | M | — | 4 (best 0.83) |
2 records more on the page itself.
Experiment against prediction
- 9DTR chain j against the predicted model Q06217: TM-score 0.97, RMSD 0.62 Å
- 5MQ0 chain j against the predicted model Q06217: TM-score 0.96, RMSD 0.76 Å
- 5MQ0 chain j against the predicted model Q06217: TM-score 0.96, RMSD 0.76 Å
- 6BK8 chain a against the predicted model Q06217: TM-score 0.96, RMSD 0.76 Å
- 6BK8 chain a against the predicted model Q06217: TM-score 0.96, RMSD 0.76 Å
- 5MPS chain j against the predicted model Q06217: TM-score 0.96, RMSD 0.76 Å
- 5MPS chain j against the predicted model Q06217: TM-score 0.96, RMSD 0.76 Å
- 7B9V chain j against the predicted model Q06217: TM-score 0.96, RMSD 0.78 Å
- 5LJ3 chain j against the predicted model Q06217: TM-score 0.95, RMSD 0.86 Å
- 5LJ5 chain j against the predicted model Q06217: TM-score 0.95, RMSD 0.86 Å
Elsewhere
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