GL1X · GenesisL1 explorer

MolNFT v2 · #139594 · protein + RNA

Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution

5WSG: “Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution”. Electron microscopy at 4.0, 3 ligands (GTP, MG, ZN). MolNFT v2 #139594 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5WSG
Type
protein + RNA
Length
9,866 residues
Chains
45
Method
electron microscopy
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
4.0
Source
Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Saccharomyces cerevisiae…
UniProt
P33334, P36048, Q03375, Q12417, P28004, P38241, Q12046, Q03772, P25337, P53333, Q03654, Q12309, P53277, Q04048, P40968, P32523, Q06091, P40018, Q12330, P54999, P40204, P43321, Q02260, Q06217, P40567, Q08963, P15938, P33411
Ligands
GTP, MG, ZN

Structure

electron microscopy · resolution 4.0 · 40 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein1931—P33334
C—protein878—P36048
J—protein27—Q03375
O—protein337—Q12417
P—protein201—P28004
Q—protein185—P38241
R—protein261—Q12046
S—protein69—Q03772
T—protein157—P25337
Z—protein447—P53333
B—rna13——
N—rna15——
D—rna117——
E—rna103——
L—rna91——
M—rna23——
c—protein436—Q03654
d—protein532—Q12309
I—protein102—P53277
v—protein593—Q04048
n—protein296—P40968
o—protein126—P32523
p—protein128—P32523
q—protein387—P32523
r—protein125—P32523
t—protein156—Q06091
k—protein80—P40018
i, G—protein75—Q12330
h, H—protein70—P54999
j, K—protein69—P40204
l, U—protein82—P43321
m, V—protein82—Q02260
g—protein94—Q06217
F—protein78—P40018
W—protein65—Q06217
X—protein81—P40567
Y—protein135—Q08963
b—rna14——
e—protein679—P15938
f—protein148—P33411

Ligands and binding sites

  • GTP · Guanosine-5'-triphosphate · ligand · chains A, C
  • MG · Magnesium ion · metal · 6 copies · chains C, B, E, b
  • ZN · Zinc ion · metal · 6 copies · chains Q, R, E, T

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5WSG · Cryo-EM structure of the catalytic step II spliceosome (C* complex) at 4.0 ångström… · the same entry in another collection · chain J against J, TM-score 1.00

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.