MolNFT v1 · #157705 · protein + RNA
S. cerevisiae spliceosomal E complex (UBC4)
6N7P: “S. cerevisiae spliceosomal E complex (UBC4)”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #157705 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N7P
- Type
- protein + RNA
- Length
- 4,839 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q00916, Q05900, P32605, Q03776, P39682, Q00539, Q03782, P53207, Q07508, P33203, P40018, Q02260, Q06217, P43321, Q12330, P54999, P40204, P34160, Q08920
- Ligands
- ZN
Structure
electron microscopy · 21 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 186 | — | Q00916 |
| B | — | protein | 195 | — | Q05900 |
| C | — | protein | 132 | — | P32605 |
| D | — | protein | 544 | — | Q03776 |
| E | — | protein | 576 | — | P39682 |
| F | — | protein | 267 | — | Q00539 |
| G | — | protein | 239 | — | Q03782 |
| H | — | protein | 105 | — | P53207 |
| I | — | protein | 192 | — | Q07508 |
| J | — | protein | 198 | — | P33203 |
| K | — | protein | 123 | — | P40018 |
| L | — | protein | 119 | — | Q02260 |
| M | — | protein | 107 | — | Q06217 |
| N | — | protein | 93 | — | P43321 |
| O | — | protein | 74 | — | Q12330 |
| P | — | protein | 74 | — | P54999 |
| Q | — | protein | 71 | — | P40204 |
| R | — | rna | 558 | — | — |
| r | — | rna | 22 | — | — |
| X | — | protein | 826 | — | P34160 |
| Y | — | protein | 138 | — | Q08920 |
Ligands and binding sites
- ZN · Zinc ion · metal · 3 copies · chains B, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N7P · S. cerevisiae spliceosomal E complex (UBC4) · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00916
- Every structure of UniProt Q05900
- Every structure of UniProt P32605
- Every structure of UniProt Q03776
- Every structure of UniProt P39682
- Every structure of UniProt Q00539
- Every structure of UniProt Q03782
- Every structure of UniProt P53207
- Every structure of UniProt Q07508
- Every structure of UniProt P33203
- Every structure of UniProt P40018
- Every structure of UniProt Q02260
- Every structure of UniProt Q06217
- Every structure of UniProt P43321
- Every structure of UniProt Q12330
- Every structure of UniProt P54999
- Every structure of UniProt P40204
- Every structure of UniProt P34160
- Every structure of UniProt Q08920
- Elsewhere: RCSB PDB 6N7P · PDBe 6N7P · UniProt Q00916 · UniProt Q05900 · UniProt P32605 · UniProt Q03776 · UniProt P39682 · UniProt Q00539 · UniProt Q03782 · UniProt P53207 · UniProt Q07508 · UniProt P33203 · UniProt P40018 · UniProt Q02260 · UniProt Q06217 · UniProt P43321 · UniProt Q12330 · UniProt P54999 · UniProt P40204 · UniProt P34160 · UniProt Q08920
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