MolNFT v2 · #143082 · protein + RNA
Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 angstrom (Part II: U1 snRNP region)
5ZWN: “Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 angstrom (Part II: U1 snRNP…”. Electron microscopy at 3.4, 1 ligand (ZN). MolNFT v2 #143082 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZWN
- Type
- protein + RNA
- Length
- 3,887 residues
- Chains
- 20
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4
- Source
- Saccharomyces cerevisiae S288c
- UniProt
- Q00916, Q05900, P32605, Q03776, P39682, Q00539, Q03782, P40018, Q02260, Q06217, P43321, Q12330, P54999, P40204, P53207, Q07508, P23394
- Ligands
- ZN
Structure
electron microscopy · resolution 3.4 · 20 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | rna | 22 | — | — |
| P | — | rna | 480 | — | — |
| Q | — | protein | 186 | — | Q00916 |
| R | — | protein | 184 | — | Q05900 |
| S | — | protein | 131 | — | P32605 |
| T | — | protein | 539 | — | Q03776 |
| U | — | protein | 583 | — | P39682 |
| V | — | protein | 187 | — | Q00539 |
| W | — | protein | 229 | — | Q03782 |
| a | — | protein | 124 | — | P40018 |
| b | — | protein | 119 | — | Q02260 |
| c | — | protein | 101 | — | Q06217 |
| d | — | protein | 92 | — | P43321 |
| e | — | protein | 74 | — | Q12330 |
| f | — | protein | 68 | — | P54999 |
| g | — | protein | 75 | — | P40204 |
| X | — | protein | 49 | — | P53207 |
| Y | — | protein | 196 | — | Q07508 |
| x | — | protein | 49 | — | — |
| y | — | protein | 399 | — | P23394 |
Ligands and binding sites
- ZN · Zinc ion · metal · 3 copies · chains R, Y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZWN · Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.3 ångström… · the same entry in another collection · chain Y against Y, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00916
- Every structure of UniProt Q05900
- Every structure of UniProt P32605
- Every structure of UniProt Q03776
- Every structure of UniProt P39682
- Every structure of UniProt Q00539
- Every structure of UniProt Q03782
- Every structure of UniProt P40018
- Every structure of UniProt Q02260
- Every structure of UniProt Q06217
- Every structure of UniProt P43321
- Every structure of UniProt Q12330
- Every structure of UniProt P54999
- Every structure of UniProt P40204
- Every structure of UniProt P53207
- Every structure of UniProt Q07508
- Every structure of UniProt P23394
- Elsewhere: RCSB PDB 5ZWN · PDBe 5ZWN · UniProt Q00916 · UniProt Q05900 · UniProt P32605 · UniProt Q03776 · UniProt P39682 · UniProt Q00539 · UniProt Q03782 · UniProt P40018 · UniProt Q02260 · UniProt Q06217 · UniProt P43321 · UniProt Q12330 · UniProt P54999 · UniProt P40204 · UniProt P53207 · UniProt Q07508 · UniProt P23394
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