UniProt P11609
Antigen-presenting glycoprotein CD1d1 (P11609)
Antigen-presenting glycoprotein CD1d1 (UniProt P11609): 121 experimental structures and 1 predicted model on GenesisL1, 15 ligands bound, 18 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P11609
- Protein
- Antigen-presenting glycoprotein CD1d1
- Experimental structures
- 121
- Predicted models
- 1
- Ligands
- 15
- Pockets
- 18 · 4 records with a druggable one
Structures
122 records of P11609 in the MolNFT archive: 121 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1CD1 | CD1(MOUSE) antigen presenting molecule | x-ray diffraction | A, C | — | — |
| 1CD1 | CD1(MOUSE) antigen presenting molecule | x-ray diffraction | A, C | — | — |
| 2AKR | Structural basis of sulfatide presentation by mouse CD1d | x-ray diffraction | A, C | — | — |
| 2AKR | Structural basis of sulfatide presentation by mouse CD1D | x-ray diffraction | A, C | — | — |
| 2FIK | Structure of a microbial glycosphingolipid bound to mouse CD1d | x-ray diffraction | A | — | — |
| 2FIK | Structure of a microbial glycosphingolipid bound to mouse CD1D | x-ray diffraction | A | — | — |
| 2GAZ | Mycobacterial lipoglycan presentation by CD1d | x-ray diffraction | A | — | — |
| 2GAZ | Mycobacterial lipoglycan presentation by CD1D | x-ray diffraction | A | — | — |
| 2Q7Y | Structure of the endogenous iNKT cell ligand iGb3 bound to mCD1d | x-ray diffraction | A, C | — | — |
| 2Q7Y | Structure of the endogenous inkt cell ligand IGB3 bound to MCD1D | x-ray diffraction | A, C | — | — |
| 3ARB | Ternary crystal structure of the NKT TCR-CD1d-alpha-galactosylceramide analogue-OCH | x-ray diffraction | A | — | — |
| 3ARB | Ternary crystal structure of the nkt TCR-CD1D-alpha-galactosylceramide analogue-och | x-ray diffraction | A | — | — |
| 3ARD | Ternary crystal structure of the mouse NKT TCR-CD1d-3'deoxy-alpha-galactosylceramide | x-ray diffraction | A | — | — |
| 3ARD | Ternary crystal structure of the mouse nkt TCR-CD1D-3'DEOXY-alpha- galactosylceramide | x-ray diffraction | A | — | — |
| 3ARE | Ternary crystal structure of the mouse NKT TCR-CD1d-4'deoxy-alpha-galactosylceramide | x-ray diffraction | A | — | — |
| 3ARE | Ternary crystal structure of the mouse nkt TCR-CD1D-4'DEOXY-alpha- galactosylceramide | x-ray diffraction | A | — | — |
| 3ARF | Ternary crystal structure of the mouse NKT TCR-CD1d-C20:2 | x-ray diffraction | A | — | — |
| 3ARF | Ternary crystal structure of the mouse nkt TCR-CD1D-C20:2 | x-ray diffraction | A | — | — |
| 3ARG | Ternary crystal structure of the mouse NKT TCR-CD1d-alpha-glucosylceramide(C20:2) | x-ray diffraction | A | — | — |
| 3ARG | Ternary crystal structure of the mouse nkt TCR-CD1D-alpha- GLUCOSYLCERAMIDE(C20:2) | x-ray diffraction | A | — | — |
| 3AU1 | Crystal structure of mouse CD1d in complex with ganglioside GD3 | x-ray diffraction | A | — | — |
| 3AU1 | Crystal structure of mouse CD1D in complex with ganglioside GD3 | x-ray diffraction | A | — | — |
| 3G08 | Crystal structure of the alpha-galactosylceramide analog OCH in complex with mouse CD1d | x-ray diffraction | A | — | — |
| 3G08 | Crystal structure of the alpha-galactosylceramide analog och in complex with mouse CD1D | x-ray diffraction | A | — | — |
| 3GML | Structure of mouse CD1d in complex with C6Ph | x-ray diffraction | A | — | — |
| 3GML | Structure of mouse CD1D in complex with C6PH | x-ray diffraction | A | — | — |
| 3GMM | Structure of mouse CD1d in complex with C8Ph | x-ray diffraction | A | — | — |
| 3GMM | Structure of mouse CD1D in complex with C8PH | x-ray diffraction | A | — | — |
| 3GMN | Structure of mouse CD1d in complex with C10Ph | x-ray diffraction | A | — | — |
| 3GMN | Structure of mouse CD1D in complex with C10PH | x-ray diffraction | A | — | — |
| 3GMO | Structure of mouse CD1d in complex with C8PhF | x-ray diffraction | A | — | — |
| 3GMO | Structure of mouse CD1D in complex with C8PHF | x-ray diffraction | A | — | — |
| 3GMP | Structure of mouse CD1d in complex with PBS-25 | x-ray diffraction | A | — | — |
| 3GMP | Structure of mouse CD1D in complex with pbs-25 | x-ray diffraction | A | — | — |
| 3GMQ | Structure of mouse CD1d expressed in SF9 cells, no ligand added | x-ray diffraction | A | — | — |
| 3GMQ | Structure of mouse CD1D expressed in SF9 cells, no ligand added | x-ray diffraction | A | — | — |
| 3GMR | Structure of mouse CD1d in complex with C8Ph, different space group | x-ray diffraction | A | — | — |
| 3GMR | Structure of mouse CD1D in complex with C8PH, different space group | x-ray diffraction | A | — | — |
| 3HE6 | Crystal structure of mouse CD1d-alpha-galactosylceramide with mouse Valpha14-Vbeta8.2 NKT TCR | x-ray diffraction | A | — | — |
| 3HE6 | Crystal structure of mouse CD1D-alpha-galactosylceramide with mouse VALPHA14-VBETA8.2 nkt TCR | x-ray diffraction | A | — | — |
| 3HE7 | Crystal structure of mouse CD1d-alpha-galactosylceramide with mouse Valpha14-Vbeta7 NKT TCR | x-ray diffraction | A | — | — |
| 3HE7 | Crystal structure of mouse CD1D-alpha-galactosylceramide with mouse VALPHA14-VBETA7 nkt TCR | x-ray diffraction | A | — | — |
| 3ILP | Structure of mCD1d with bound glycolipid BbGL-2f from Borrelia burgdorferi | x-ray diffraction | A | — | — |
| 3ILP | Structure of MCD1D with bound glycolipid bbgl-2F from borrelia burgdorferi | x-ray diffraction | A | — | — |
| 3ILQ | Structure of mCD1d with bound glycolipid BbGL-2c from Borrelia burgdorferi | x-ray diffraction | C | — | — |
| 3ILQ | Structure of MCD1D with bound glycolipid bbgl-2C from borrelia burgdorferi | x-ray diffraction | C | — | — |
| 3MA7 | Crystal structure of Cardiolipin bound to mouse CD1D | x-ray diffraction | C, A | — | — |
| 3MA7 | Crystal structure of cardiolipin bound to mouse CD1D | x-ray diffraction | C, A | — | — |
| 3O8X | Recognition of Glycolipid Antigen by iNKT Cell TCR | x-ray diffraction | A | — | — |
| 3O8X | Recognition of glycolipid antigen by inkt cell TCR | x-ray diffraction | A | NAG, FUC, GSL | 5 (best 0.87) |
| 3O9W | Recognition of a Glycolipid Antigen by the iNKT Cell TCR | x-ray diffraction | A | — | — |
| 3O9W | Recognition of a glycolipid antigen by the inkt cell TCR | x-ray diffraction | A | — | — |
| 3QI9 | Crystal structure of mouse CD1d-alpha-phosphotidylinositol with mouse Valpha14-Vbeta6 2A3-D NKT TCR | x-ray diffraction | A | — | — |
| 3QI9 | Crystal structure of mouse CD1D-alpha-phosphotidylinositol with mouse VALPHA14-VBETA6 2A3-D nkt TCR | x-ray diffraction | A | — | — |
| 3QUX | Structure of the mouse CD1d-alpha-C-GalCer-iNKT TCR complex | x-ray diffraction | A | — | — |
| 3QUX | Structure of the mouse CD1D-alpha-C-galcer-inkt TCR complex | x-ray diffraction | A | — | — |
| 3QUY | Structure of the mouse CD1d-BnNH-GSL-1'-iNKT TCR complex | x-ray diffraction | A | — | — |
| 3QUY | Structure of the mouse CD1D-bnnh-gsl-1'-inkt TCR complex | x-ray diffraction | A | — | — |
| 3QUZ | Structure of the mouse CD1d-NU-alpha-GalCer-iNKT TCR complex | x-ray diffraction | A | — | — |
| 3QUZ | Structure of the mouse CD1D-nu-alpha-galcer-inkt TCR complex | x-ray diffraction | A | — | — |
62 records more on the page itself.
Ligands
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 11 records
- FUC · alpha-L-fucopyranose · in 5 records
- PLM · Palmitic acid · in 5 records
- 7LM · N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide · in 2 records
- 4LX · N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]hexacosanethioamide · in 1 record
- 6UL · Tetracosyl palmitate · in 1 record
- 7LP · (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide · in 1 record
- GSL · (2S,3R)-3-hydroxy-2-(tetradecanoylamino)octadecyl alpha-D-galactopyranosiduronic acid · in 1 record
- HP6 · Heptane · in 1 record
- MAN · alpha-D-mannopyranose · in 1 record
- N57 · (2S,3S,4R)-2-amino-3,4-dihydroxyoctadecyl alpha-D-galactopyranoside · in 1 record
- PBS · (2S,3S,4R)-N-octanoyl-1-[(alpha-D-galactopyranosyl) oxy]-2-amino-octadecane-3,4-diol · in 1 record
- QOD · (3R)-N-[(2S,3R)-1-(alpha-D-galactopyranosyloxy)-3-hydroxy-15-methylhexadecan-2-yl]-3-hydroxyheptadecanamide · in 1 record
- SRV · (2S)-2-(heptadecanoyloxy)-3-{[(10S)-10-methyloctadecanoyl]oxy}propyl alpha-D-glucopyranosiduronic acid · in 1 record
- V8P · (3R)-N-[(2S,3R)-1-(alpha-D-galactopyranosyloxy)-3-hydroxyheptadecan-2-yl]-3-hydroxyheptadecanamide · in 1 record
Experiment against prediction
- 3QUY chain A against the predicted model P11609: TM-score 1.00, RMSD 0.29 Å
- 3QUY chain A against the predicted model P11609: TM-score 1.00, RMSD 0.29 Å
- 4ZAK chain A against the predicted model P11609: TM-score 1.00, RMSD 0.30 Å
- 4ZAK chain A against the predicted model P11609: TM-score 1.00, RMSD 0.30 Å
- 3RZC chain A against the predicted model P11609: TM-score 1.00, RMSD 0.33 Å
- 3RZC chain A against the predicted model P11609: TM-score 1.00, RMSD 0.33 Å
- 3RTQ chain A against the predicted model P11609: TM-score 1.00, RMSD 0.35 Å
- 3RTQ chain A against the predicted model P11609: TM-score 1.00, RMSD 0.35 Å
- 4IRS chain A against the predicted model P11609: TM-score 1.00, RMSD 0.36 Å
- 4IRS chain A against the predicted model P11609: TM-score 1.00, RMSD 0.36 Å
Elsewhere
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