Ligand · DB3
DB3 · (11Z,14E)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide
DB3, (11Z,14E)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide (C44 H83 N O9, 770.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with…
- Component
- DB3
- Formula
- C44 H83 N O9
- Class
- ligand
- Structures
- 4
- PDB entries
- 2
Binding sites
DB3 in 4 structures; the first of them:
- 3ARF · Ternary crystal structure of the mouse NKT TCR-CD1d-C20:2 · DB3 A650 · binds PHE10, CYS12, GLN14, SER28, VAL30, ILE47, LEU66, MET69 and 30 more
- 3VWJ · Ternary crystal structure of the human NKT TCR-CD1d-C20:2 complex · DB3 A303 · binds CYS12, LEU13, GLN14, GLY28, LEU29, ALA30, HIS38, VAL47 and 29 more
- 3ARF · Ternary crystal structure of the mouse nkt TCR-CD1D-C20:2 · DB3 A650 · binds PHE10, CYS12, GLN14, SER28, VAL30, ILE47, LEU66, MET69 and 30 more
- 3VWJ · Ternary crystal structure of the human nkt TCR-CD1D-C20:2 complex · DB3 A303 · binds CYS12, LEU13, GLN14, GLY28, LEU29, ALA30, HIS38, VAL47 and 29 more
Residues it binds most
LEU 4, PHE 4, VAL 4, ASP 4, GLY 4, SER 4, TRP 4, ILE 4, THR 4, ALA 4 (residue and the binding sites it lines).
Found with
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