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Ligand · DB6

DB6 · (11E,14E)-N-[(2S,3S,4R)-1-(alpha-D-glucopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide

DB6, (11E,14E)-N-[(2S,3S,4R)-1-(alpha-D-glucopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide (C44 H83 N O9, 770.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with…

Component
DB6
Formula
C44 H83 N O9
Class
ligand
Structures
4
PDB entries
2

Binding sites

DB6 in 4 structures; the first of them:

  • 3ARG · Ternary crystal structure of the mouse NKT TCR-CD1d-alpha-glucosylceramide(C20:2) · DB6 A650 · binds CYS12, GLN14, SER28, VAL30, MET69, PHE70, TYR73, SER76 and 20 more
  • 3RUG · Crystal structure of Valpha10-Vbeta8.1 NKT TCR in complex with CD1d-alphaglucosylceramide… · DB6 A303 · binds CYS12, LEU13, GLN14, SER28, VAL30, TRP40, ILE47, MET69 and 38 more
  • 3ARG · Ternary crystal structure of the mouse nkt TCR-CD1D-alpha- GLUCOSYLCERAMIDE(C20:2) · DB6 A650 · binds CYS12, GLN14, SER28, VAL30, MET69, PHE70, TYR73, SER76 and 20 more
  • 3RUG · Crystal structure of VALPHA10-VBETA8.1 nkt TCR in complex with CD1D… · DB6 A303 · binds CYS12, LEU13, GLN14, SER28, VAL30, TRP40, ILE47, MET69 and 38 more

Residues it binds most

VAL 6, LEU 6, SER 6, PHE 6, ILE 6, TRP 6, THR 6, ASP 6, GLY 6, ASN 6 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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