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Ligand · 49M

49M · (1R)-1,5-anhydro-1-[(1E,3S,4S,5R)-4,5-dihydroxy-3-(nonacosanoylamino)nonadec-1-en-1-yl]-D-galactitol

49M, (1R)-1,5-anhydro-1-[(1E,3S,4S,5R)-4,5-dihydroxy-3-(nonacosanoylamino)nonadec-1-en-1-yl]-D-galactitol (C54 H105 N O8, 896.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
49M
Formula
C54 H105 N O8
Class
ligand
Structures
2
PDB entries
1

Binding sites

49M in 2 structures; the first of them:

  • 4Y4F · Crystal structure of the mCD1d/GCK127/iNKTCR ternary complex · 49M A504 · binds CYS12, GLN14, SER28, VAL30, HIS38, TRP40, ILE47, TRP63 and 35 more
  • 4Y4F · Crystal structure of the MCD1D/GCK127/INKTCR ternary complex · 49M A504 · binds CYS12, GLN14, SER28, VAL30, HIS38, TRP40, ILE47, TRP63 and 35 more

Residues it binds most

LEU 4, PHE 4, VAL 4, TRP 4, ASP 4, GLY 4, ILE 4, CYS 4, SER 4, PRO 4 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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