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Ligand · 1O2

1O2 · (2S)-3-(alpha-D-galactopyranosyloxy)-2-(hexadecanoyloxy)propyl (9Z)-octadec-9-enoate

1O2, (2S)-3-(alpha-D-galactopyranosyloxy)-2-(hexadecanoyloxy)propyl (9Z)-octadec-9-enoate (C43 H80 O10, 757.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within…

Component
1O2
Formula
C43 H80 O10
Class
ligand
Structures
6
PDB entries
3

Binding sites

1O2 in 6 structures; the first of them:

  • 3ILQ · Structure of mCD1d with bound glycolipid BbGL-2c from Borrelia burgdorferi · 1O2 C286 · binds PHE10, CYS12, GLN14, SER28, VAL30, TRP40, ILE47, TRP63 and 26 more
  • 3O9W · Recognition of a Glycolipid Antigen by the iNKT Cell TCR · 1O2 A507 · binds PHE10, CYS12, GLN14, SER28, VAL30, TRP40, ILE47, TRP63 and 31 more
  • 4OGQ · Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome b6f Complex · 1O2 F103 · binds ILE8, LEU11, ALA12, THR15, GLY16, ALA19, PHE23, LEU22 and 4 more
  • 3ILQ · Structure of MCD1D with bound glycolipid bbgl-2C from borrelia burgdorferi · 1O2 C286 · binds PHE10, CYS12, GLN14, SER28, VAL30, TRP40, ILE47, TRP63 and 26 more
  • 3O9W · Recognition of a glycolipid antigen by the inkt cell TCR · 1O2 A507 · binds PHE10, CYS12, GLN14, SER28, VAL30, TRP40, ILE47, TRP63 and 31 more
  • 4OGQ · Internal lipid architecture of the hetero-oligomeric cytochrome B6F complex · 1O2 F103 · binds ILE8, LEU11, ALA12, THR15, GLY16, ALA19, PHE23, LEU22 and 4 more

Residues it binds most

LEU 6, PHE 6, VAL 4, TRP 4, ILE 6, ASP 4, THR 6, GLY 4, SER 4, ALA 4 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • 2WA · (1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol
  • 2WD · (1R)-1-{[(2S)-3-hydroxy-2-{[(1R)-1-hydroxypentyl]oxy}propyl]oxy}hexan-1-ol
  • 2WM · (1S,8E)-1-{[(2S)-3-hydroxy-2-{[(1S)-1-hydroxyoctadecyl]oxy}propyl]oxy}octadec-8-en-1-ol
  • 3WM · (1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-hydroxypropane-1,2-diyl]bis(oxy)}bisoctadec-8-en-1-ol
  • 7PH · (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate
  • 8K6 · Octadecane
  • BCR · Beta-carotene
  • CLA · Chlorophyll A
  • FES · Fe2/s2 (inorganic) cluster
  • HEC · Heme C
  • MYS · Pentadecane

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