GL1X · GenesisL1 explorer

Ligand · 2WA

2WA · (1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol

2WA, (1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol (C35 H70 O5, 570.9 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
2WA
Formula
C35 H70 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

2WA in 2 structures; the first of them:

  • 7R0W · 2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP complex from… · 2WA B303 · binds ILE105, PHE109, TRP79, TYR82, PRO83, THR137, ALA138, ALA140 and 12 more
  • 7R0W · 2.8 ångström cryo-EM structure of the dimeric cytochrome B6F-petp complex from… · 2WA B303 · binds PHE109, TRP79, TYR82, PRO83, THR137, ALA138, ALA140, LEU141 and 8 more

Residues it binds most

LEU 2, ALA 2, PHE 2, THR 2, TRP 2, GLY 2, ILE 1, PRO 2, TYR 2 (residue and the binding sites it lines).

Found with

  • 6PL · (4S,7R)-4-hydroxy-N,N,N-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide
  • CLA · Chlorophyll A
  • ECH · beta,beta-caroten-4-one
  • FES · Fe2/s2 (inorganic) cluster
  • HEC · Heme C
  • HEM · Protoporphyrin IX containing Fe
  • LFA · Eicosane
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate
  • PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone
  • SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol

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