PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone

Binding sites

PL9 in 110 structures; the first of them:

• 5E79 · Macromolecular diffractive imaging using imperfect crystals · PL9 A611 · binds PHE211, MET214, HIS215, LEU218, VAL219, TYR246, ILE248, ALA251 and 24 more
• 5GTH · Native XFEL structure of photosystem II (dark dataset) · PL9 A414 · binds PHE211, MET214, HIS215, LEU218, VAL219, TYR246, ILE248, ALA251 and 21 more
• 5GTI · Native XFEL structure of photosystem II (two flash dataset) · PL9 A413 · binds PHE211, MET214, HIS215, LEU218, VAL219, TYR246, ILE248, ALA251 and 22 more
• 5H2F · Crystal structure of the PsbM-deletion mutant of photosystem II · PL9 A411 · binds PHE211, MET214, HIS215, LEU218, VAL219, ILE248, ALA251, HIS252 and 22 more
• 5KAF · RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution · PL9 A611 · binds PHE211, MET214, HIS215, LEU218, VAL219, TYR246, ILE248, ALA251 and 24 more
• 5KAI · NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at… · PL9 A611 · binds PHE211, MET214, HIS215, LEU218, VAL219, TYR246, ILE248, ALA251 and 22 more
• 5MX2 · Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution · PL9 A408 · binds PHE211, HIS215, LEU218, ILE248, HIS252, PHE255, ALA263, SER264 and 13 more
• 5V2C · Re-refinement of crystal structure of photosystem II complex · PL9 A611 · binds PHE211, MET214, HIS215, LEU218, VAL219, TYR246, ILE248, ALA251 and 25 more
• 5WS5 · Native XFEL structure of photosystem II (preflash dark dataset) · PL9 A414 · binds PHE211, MET214, HIS215, LEU218, VAL219, TYR246, ILE248, ALA251 and 23 more
• 5XNM · Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum · PL9 A414 · binds PHE211, MET214, HIS215, LEU218, ALA251, HIS252, PHE255, SER264 and 4 more

Residues it binds most

LEU 412, PHE 415, ILE 391, ALA 401, VAL 369, MET 398, THR 367, GLY 302, HIS 397, TYR 312 (residue and the binding sites it lines).

Found with

• LMG · 1,2-distearoyl-monogalactosyl-diglyceride
• CLA · Chlorophyll A
• LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
• BCR · Beta-carotene
• PHO · Pheophytin A
• DGD · Digalactosyl diacyl glycerol (dgdg)
• HEM · Protoporphyrin IX containing Fe
• SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol
• BCT · Bicarbonate ion
• FE2 · Fe (II) ion
• CL · Chloride ion
• OEX · Ca-MN4-O5 cluster