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Ligand · OEX

OEX · Ca-MN4-O5 cluster

OEX, Ca-MN4-O5 cluster (Ca Mn4 O5, 339.8 g/mol), in the MolNFT structures on GenesisL1: bound in 71 records (61 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
OEX
Formula
Ca Mn4 O5
Class
ligand
Structures
71
PDB entries
61

Binding sites

OEX in 71 structures; the first of them:

  • 5GTH · Native XFEL structure of photosystem II (dark dataset) · OEX A413 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 5GTI · Native XFEL structure of photosystem II (two flash dataset) · OEX A412 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 5H2F · Crystal structure of the PsbM-deletion mutant of photosystem II · OEX A401 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 5KAF · RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution · OEX A601 · binds ASP61, GLN165, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 5KAI · NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at… · OEX A601 · binds GLN165, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337, ASP342 and 3 more
  • 5V2C · Re-refinement of crystal structure of photosystem II complex · OEX A601 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 5WS5 · Native XFEL structure of photosystem II (preflash dark dataset) · OEX A413 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 6DHP · RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04… · OEX A601 · binds ASP61, GLN165, SER169, ASP170, VAL185, GLU189, HIS332, GLU333 and 5 more
  • 6J3Y · Structure of C2S2-type PSII-FCPII supercomplex from diatom · OEX C501 · binds GLN165, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 6J3Z · Structure of C2S1M1-type PSII-FCPII supercomplex from diatom · OEX C501 · binds SER169, ASP170, GLU189, HIS332, GLU333, HIS337, ASP342, ALA344 and 2 more
  • 6J40 · Structure of C2S2M2-type PSII-FCPII supercomplex from diatom · OEX C501 · binds GLN165, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 6JLL · XFEL structure of cyanobacterial photosystem II (2F state, dataset1) · OEX A418 · binds ASP61, TYR161, SER169, ASP170, VAL185, GLU189, HIS332, GLU333 and 5 more
  • 6JLM · XFEL structure of cyanobacterial photosystem II (dark state, dataset2) · OEX A416 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 6KAD · Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas… · OEX A401 · binds GLN165, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 6W1O · RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08… · OEX A414 · binds ASP61, TYR161, SER169, ASP170, VAL185, GLU189, HIS332, GLU333 and 5 more
  • 6W1P · RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom… · OEX A416 · binds ASP61, GLN165, SER169, ASP170, VAL185, GLU189, HIS332, GLU333 and 5 more
  • 6W1R · RT XFEL structure of Photosystem II 150 microseconds after the second illumination at… · OEX A415 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 7CJJ · Photosystem II structure in the S2 state · OEX A412 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 7COU · Structure of cyanobacterial photosystem II in the dark S1 state · OEX A412 · binds ASP61, SER169, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337 and 4 more
  • 7D1T · Cryo-EM Structure of PSII at 1.95 angstrom resolution · OEX A401 · binds ASP61, ASP170, VAL185, GLU189, HIS332, GLU333, HIS337, ASP342 and 3 more

Residues it binds most

GLU 143, ASP 143, HIS 143, ARG 143, ALA 139, VAL 113, SER 82, GLN 42, TYR 12, LEU 7 (residue and the binding sites it lines).

Found with

  • BCT · Bicarbonate ion
  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • PHO · Pheophytin A
  • PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone
  • FE2 · Fe (II) ion
  • SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol
  • BCR · Beta-carotene
  • HEM · Protoporphyrin IX containing Fe
  • CL · Chloride ion

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