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Ligand · 3WM

3WM · (1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-hydroxypropane-1,2-diyl]bis(oxy)}bisoctadec-8-en-1-ol

3WM, (1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-hydroxypropane-1,2-diyl]bis(oxy)}bisoctadec-8-en-1-ol (C39 H76 O5, 625.0 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
3WM
Formula
C39 H76 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

3WM in 2 structures; the first of them:

  • 4OGQ · Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome b6f Complex · 3WM E101 · binds ILE39, CYS43, MET92, MET96, SER47, CYS50, ILE51, GLN38 and 20 more
  • 4OGQ · Internal lipid architecture of the hetero-oligomeric cytochrome B6F complex · 3WM E101 · binds ILE39, CYS43, MET92, MET96, SER47, CYS50, ILE51, GLN38 and 20 more

Residues it binds most

LEU 2, ILE 2, SER 2, ALA 2, CYS 2, MET 2, ASN 2, GLN 2, GLU 2, PHE 2 (residue and the binding sites it lines).

Found with

  • 1O2 · (2S)-3-(alpha-D-galactopyranosyloxy)-2-(hexadecanoyloxy)propyl (9Z)-octadec-9-enoate
  • 2WA · (1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol
  • 2WD · (1R)-1-{[(2S)-3-hydroxy-2-{[(1R)-1-hydroxypentyl]oxy}propyl]oxy}hexan-1-ol
  • 2WM · (1S,8E)-1-{[(2S)-3-hydroxy-2-{[(1S)-1-hydroxyoctadecyl]oxy}propyl]oxy}octadec-8-en-1-ol
  • 7PH · (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate
  • 8K6 · Octadecane
  • BCR · Beta-carotene
  • CLA · Chlorophyll A
  • FES · Fe2/s2 (inorganic) cluster
  • HEC · Heme C
  • MYS · Pentadecane
  • OPC · (7R,17E)-4-hydroxy-N,N,N,7-tetramethyl-7-[(8E)-octadec-8-enoyloxy]-10-oxo-3,5,9-trioxa-4-phosphaheptacos-17-en-1-aminium 4-oxide

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