GL1X · GenesisL1 explorer

Ligand · 1L9

1L9 · N-[(2S,3S,4R)-1-({6-O-[(4-chlorophenyl)carbamoyl]-alpha-D-galactopyranosyl}oxy)-3,4-dihydroxyoctadecan-2-yl]hexacosanamide

1L9, N-[(2S,3S,4R)-1-({6-O-[(4-chlorophenyl)carbamoyl]-alpha-D-galactopyranosyl}oxy)-3,4-dihydroxyoctadecan-2-yl]hexacosanamide (C57 H103 Cl N2 O10, 1011.9 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry).…

Component
1L9
Formula
C57 H103 Cl N2 O10
Class
ligand
Structures
2
PDB entries
1

Binding sites

1L9 in 2 structures; the first of them:

  • 4IRJ · Structure of the mouse CD1d-4ClPhC-alpha-GalCer-iNKT TCR complex · 1L9 A306 · binds PHE10, CYS12, GLN14, SER28, VAL30, HIS38, TRP40, ILE47 and 38 more
  • 4IRJ · Structure of the mouse CD1D-4CLPHC-alpha-galcer-inkt TCR complex · 1L9 A306 · binds PHE10, CYS12, GLN14, SER28, VAL30, HIS38, TRP40, ILE47 and 38 more

Residues it binds most

LEU 2, PHE 2, VAL 2, TRP 2, ASP 2, CYS 2, GLY 2, ILE 2, MET 2, PRO 2 (residue and the binding sites it lines).

Found with

  • FUC · alpha-L-fucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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