GL1X · GenesisL1 explorer

Ligand · 3GB

3GB · N-[(2S,3R,4E)-1-{[alpha-D-galactopyranosyl-(1->4)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyl]oxy}-3-hydroxyoctadec-4-en-2-yl]hexacosanamide

3GB, N-[(2S,3R,4E)-1-{[alpha-D-galactopyranosyl-(1->4)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyl]oxy}-3-hydroxyoctadec-4-en-2-yl]hexacosanamide (C62 H117 N O18, 1164.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2…

Component
3GB
Formula
C62 H117 N O18
Class
ligand
Structures
2
PDB entries
1

Binding sites

3GB in 2 structures; the first of them:

  • 3SDC · Crystal structure of autoreactive-Valpha14-Vbeta6 NKT TCR in complex with… · 3GB A307 · binds PHE10, CYS12, GLN14, SER28, VAL30, TRP40, ILE47, TRP63 and 40 more
  • 3SDC · Crystal structure of autoreactive-VALPHA14-VBETA6 nkt TCR in complex with… · 3GB A307 · binds PHE10, CYS12, GLN14, SER28, VAL30, TRP40, ILE47, TRP63 and 40 more

Residues it binds most

LEU 2, VAL 2, ASP 2, PHE 2, TRP 2, THR 2, ALA 2, CYS 2, GLN 2, GLY 2 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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