MolNFT v2 · #120893 · protein + RNA
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
5H4P: “Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1”. Electron microscopy at 3.07. MolNFT v2 #120893 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5H4P
- Type
- protein + RNA
- Length
- 9,802 residues
- Chains
- 44
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.07
- Source
- Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- UniProt
- P0CX45, P14126, P10664, P26321, Q02326, P05737, P17076, P05738, P0C0W9, Q12690, P36105, P05748, P26784, P05740, P0CX49, P0CX82, P0CX23, Q02753, P05749, P0CX41, P04449, P04456, P05743, P0C2H6, P02406, P05747, P14120, P0C2H8, P38061, P05744, P87262, P0CX84, P05745, P49166, P49167, P04650, P0CX27, P0CX25, P38861, Q12522, Q06709
Structure
electron microscopy · resolution 3.07 · 44 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | — | rna | 3091 | — | — |
| 3 | — | rna | 121 | — | — |
| 4 | — | rna | 158 | — | — |
| A | — | protein | 246 | — | P0CX45 |
| B | — | protein | 386 | — | P14126 |
| C | — | protein | 361 | — | P10664 |
| D | — | protein | 296 | — | P26321 |
| E | — | protein | 156 | — | Q02326 |
| F | — | protein | 222 | — | P05737 |
| G | — | protein | 233 | — | P17076 |
| H | — | protein | 191 | — | P05738 |
| J | — | protein | 169 | — | P0C0W9 |
| L | — | protein | 193 | — | Q12690 |
| M | — | protein | 136 | — | P36105 |
| N | — | protein | 203 | — | P05748 |
| O | — | protein | 197 | — | P26784 |
| P | — | protein | 183 | — | P05740 |
| Q | — | protein | 185 | — | P0CX49 |
| R | — | protein | 156 | — | P0CX82 |
| S | — | protein | 172 | — | P0CX23 |
| T | — | protein | 159 | — | Q02753 |
| U | — | protein | 100 | — | P05749 |
| V | — | protein | 136 | — | P0CX41 |
| W | — | protein | 64 | — | P04449 |
| X | — | protein | 121 | — | P04456 |
| Y | — | protein | 126 | — | P05743 |
| Z | — | protein | 135 | — | P0C2H6 |
| a | — | protein | 148 | — | P02406 |
| b | — | protein | 58 | — | P05747 |
| c | — | protein | 97 | — | P14120 |
| d | — | protein | 109 | — | P0C2H8 |
| e | — | protein | 127 | — | P38061 |
| f | — | protein | 106 | — | P05744 |
| g | — | protein | 112 | — | P87262 |
| h | — | protein | 119 | — | P0CX84 |
| i | — | protein | 99 | — | P05745 |
| j | — | protein | 87 | — | P49166 |
| k | — | protein | 77 | — | P49167 |
| l | — | protein | 50 | — | P04650 |
| o | — | protein | 95 | — | P0CX27 |
| p | — | protein | 91 | — | P0CX25 |
| w | — | protein | 248 | — | P38861 |
| y | — | protein | 227 | — | Q12522 |
| z | — | protein | 56 | — | Q06709 |
Compared structures
- P0CX45 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L2-a (P0CX45) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P05743 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L26-a (P05743) · a predicted model of the same protein · chain Y against A, TM-score 0.98
- P38061 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L32 (P38061) · a predicted model of the same protein · chain e against A, TM-score 0.98
- P0CX49 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L18-a (P0CX49) · a predicted model of the same protein · chain Q against A, TM-score 0.97
- P02406 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L28 (P02406) · a predicted model of the same protein · chain a against A, TM-score 0.97
- P05744 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L33-a (P05744) · a predicted model of the same protein · chain f against A, TM-score 0.97
- P38861 · AlphaFold monomer V2.0 prediction for 60S ribosomal export protein NMD3 (P38861) · a predicted model of the same protein · chain w against A, TM-score 0.97
- P14120 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L30 (P14120) · a predicted model of the same protein · chain c against A, TM-score 0.96
- Q02753 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L21-a (Q02753) · a predicted model of the same protein · chain T against A, TM-score 0.96
- P0C2H8 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L31-a (P0C2H8) · a predicted model of the same protein · chain d against A, TM-score 0.95
- P49166 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L37-a (P49166) · a predicted model of the same protein · chain j against A, TM-score 0.94
- P36105 · AlphaFold monomer V2.0 prediction for 60S ribosomal protein L14-a (P36105) · a predicted model of the same protein · chain M against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CX45
- Every structure of UniProt P14126
- Every structure of UniProt P10664
- Every structure of UniProt P26321
- Every structure of UniProt Q02326
- Every structure of UniProt P05737
- Every structure of UniProt P17076
- Every structure of UniProt P05738
- Every structure of UniProt P0C0W9
- Every structure of UniProt Q12690
- Every structure of UniProt P36105
- Every structure of UniProt P05748
- Every structure of UniProt P26784
- Every structure of UniProt P05740
- Every structure of UniProt P0CX49
- Every structure of UniProt P0CX82
- Every structure of UniProt P0CX23
- Every structure of UniProt Q02753
- Every structure of UniProt P05749
- Every structure of UniProt P0CX41
- Every structure of UniProt P04449
- Every structure of UniProt P04456
- Every structure of UniProt P05743
- Every structure of UniProt P0C2H6
- Every structure of UniProt P02406
- Every structure of UniProt P05747
- Every structure of UniProt P14120
- Every structure of UniProt P0C2H8
- Every structure of UniProt P38061
- Every structure of UniProt P05744
- Every structure of UniProt P87262
- Every structure of UniProt P0CX84
- Every structure of UniProt P05745
- Every structure of UniProt P49166
- Every structure of UniProt P49167
- Every structure of UniProt P04650
- Every structure of UniProt P0CX27
- Every structure of UniProt P0CX25
- Every structure of UniProt P38861
- Every structure of UniProt Q12522
- Every structure of UniProt Q06709
- Elsewhere: RCSB PDB 5H4P · PDBe 5H4P · UniProt P0CX45 · UniProt P14126 · UniProt P10664 · UniProt P26321 · UniProt Q02326 · UniProt P05737 · UniProt P17076 · UniProt P05738 · UniProt P0C0W9 · UniProt Q12690 · UniProt P36105 · UniProt P05748 · UniProt P26784 · UniProt P05740 · UniProt P0CX49 · UniProt P0CX82 · UniProt P0CX23 · UniProt Q02753 · UniProt P05749 · UniProt P0CX41 · UniProt P04449 · UniProt P04456 · UniProt P05743 · UniProt P0C2H6 · UniProt P02406 · UniProt P05747 · UniProt P14120 · UniProt P0C2H8 · UniProt P38061 · UniProt P05744 · UniProt P87262 · UniProt P0CX84 · UniProt P05745 · UniProt P49166 · UniProt P49167 · UniProt P04650 · UniProt P0CX27 · UniProt P0CX25 · UniProt P38861 · UniProt Q12522 · UniProt Q06709
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