MolNFT v2 · #197664 · protein
Membrane arm of deactive state CI from DQ-NADH dataset
7VBP: “Membrane arm of deactive state CI from DQ-NADH dataset”. Electron microscopy at 2.8, 6 ligands (PEE, CDL, PLX). MolNFT v2 #197664 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VBP
- Type
- protein
- Length
- 4,652 residues
- Chains
- 29
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.8
- Source
- Sus scrofa
- UniProt
- A0A480JYS1, K7GR43, A0A4X1VQ42, I3LGM4, F1S6Q1, D0G781, A0A4X1V766, A0A287AS93, F1SGC6, Q2EN80, F1RWL7, A0A4X1VYV0, A1XQS6, A0A480JRW3, F1SV23, O79875, O79880, P56632, Q71K68, O79882, F1SD73, A0A4X1T6M0, A0A4X1T0A8, Q7IIB7, O79874, F1SLR1, F1SCH1, F1SIS9
- Ligands
- PEE, CDL, PLX, 8Q1, UQ, ADP
Structure
electron microscopy · resolution 2.8 · 29 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| Q | — | protein | 40 | — | A0A480JYS1 |
| S | — | protein | 70 | — | K7GR43 |
| U | — | protein | 83 | — | A0A4X1VQ42 |
| V | — | protein | 140 | — | I3LGM4 |
| W | — | protein | 113 | — | F1S6Q1 |
| X | — | protein | 88 | — | D0G781 |
| Y | — | protein | 70 | — | A0A4X1V766 |
| Z | — | protein | 84 | — | A0A287AS93 |
| a | — | protein | 140 | — | F1SGC6 |
| b | — | protein | 103 | — | Q2EN80 |
| c | — | protein | 156 | — | F1RWL7 |
| d | — | protein | 175 | — | A0A4X1VYV0 |
| e | — | protein | 107 | — | — |
| f | — | protein | 42 | — | A1XQS6 |
| g | — | protein | 121 | — | A0A480JRW3 |
| h | — | protein | 105 | — | F1SV23 |
| i | — | protein | 347 | — | O79875 |
| j | — | protein | 99 | — | O79880 |
| k | — | protein | 98 | — | P56632 |
| l | — | protein | 603 | — | Q71K68 |
| m | — | protein | 129 | — | O79882 |
| n | — | protein | 56 | — | F1SD73 |
| o | — | protein | 128 | — | A0A4X1T6M0 |
| p | — | protein | 178 | — | A0A4X1T0A8 |
| r | — | protein | 459 | — | Q7IIB7 |
| s | — | protein | 303 | — | O79874 |
| u | — | protein | 171 | — | F1SLR1 |
| v | — | protein | 124 | — | F1SCH1 |
| w | — | protein | 320 | — | F1SIS9 |
Ligands and binding sites
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · 7 copies · chains Q, i, l, r, U, j, s, b, c, S, W, m, V
- CDL · Cardiolipin · ligand · 6 copies · chains V, l, o, r, a, b, d, e, g, i, n, u, c, w
- PLX · (9R,11S)-9-({[(1S)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2lambda~5~-aza-6lambda~5~-phosphaoctacosane-6,6,11-triol · ligand · 5 copies · chains a, e, n, r, g, h, i, j, m, V, l
- 8Q1 · S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate · ligand · chains X, p
- UQ · Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer · ligand · chains s
- ADP · Adenosine-5'-diphosphate · ligand · chains w
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VBP · Membrane arm of deactive state ci from dq-NADH dataset · the same entry in another collection · chain c against c, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A480JYS1
- Every structure of UniProt K7GR43
- Every structure of UniProt A0A4X1VQ42
- Every structure of UniProt I3LGM4
- Every structure of UniProt F1S6Q1
- Every structure of UniProt D0G781
- Every structure of UniProt A0A4X1V766
- Every structure of UniProt A0A287AS93
- Every structure of UniProt F1SGC6
- Every structure of UniProt Q2EN80
- Every structure of UniProt F1RWL7
- Every structure of UniProt A0A4X1VYV0
- Every structure of UniProt A1XQS6
- Every structure of UniProt A0A480JRW3
- Every structure of UniProt F1SV23
- Every structure of UniProt O79875
- Every structure of UniProt O79880
- Every structure of UniProt P56632
- Every structure of UniProt Q71K68
- Every structure of UniProt O79882
- Every structure of UniProt F1SD73
- Every structure of UniProt A0A4X1T6M0
- Every structure of UniProt A0A4X1T0A8
- Every structure of UniProt Q7IIB7
- Every structure of UniProt O79874
- Every structure of UniProt F1SLR1
- Every structure of UniProt F1SCH1
- Every structure of UniProt F1SIS9
- Elsewhere: RCSB PDB 7VBP · PDBe 7VBP · UniProt A0A480JYS1 · UniProt K7GR43 · UniProt A0A4X1VQ42 · UniProt I3LGM4 · UniProt F1S6Q1 · UniProt D0G781 · UniProt A0A4X1V766 · UniProt A0A287AS93 · UniProt F1SGC6 · UniProt Q2EN80 · UniProt F1RWL7 · UniProt A0A4X1VYV0 · UniProt A1XQS6 · UniProt A0A480JRW3 · UniProt F1SV23 · UniProt O79875 · UniProt O79880 · UniProt P56632 · UniProt Q71K68 · UniProt O79882 · UniProt F1SD73 · UniProt A0A4X1T6M0 · UniProt A0A4X1T0A8 · UniProt Q7IIB7 · UniProt O79874 · UniProt F1SLR1 · UniProt F1SCH1 · UniProt F1SIS9
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