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Cryo-EM structure of a late human pre-40S ribosomal subunit - state F2

Analyse Cryo-EM structure of a late human pre-40S ribosomal subunit - state F2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6ZXE
Type
protein + RNA
Length
7,548 residues
Chains
37
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P08708, P08865, P61247, P15880, P62701, P62753, P62081, P62241, P46781, P62280, P62277, P62263, P63220, P62244, P62266, P62847, P42677, P62861, Q9NRX1, Q9ULX3, P62273, P23396, P46782, P46783, P25398, P62841, P62249, P62269, P39019, P60866, P62851, P62857, P62979, P63244, Q8N1G4, Q9BRS2
Ligands
ZN

Structure

electron microscopy · 37 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
2—rna1645——
R—protein122—P08708
A—protein216—P08865
B—protein213—P61247
C—protein218—P15880
E—protein262—P62701
G—protein230—P62753
H—protein186—P62081
I—protein205—P62241
J—protein180—P46781
L—protein151—P62280
N—protein149—P62277
O—protein135—P62263
V—protein82—P63220
W—protein129—P62244
X—protein141—P62266
Y—protein124—P62847
b—protein82—P42677
e—protein47—P62861
x—protein178—Q9NRX1
y—protein325—Q9ULX3
d—protein55—P62273
D—protein225—P23396
F—protein189—P46782
K—protein95—P46783
M—protein123—P25398
P—protein120—P62841
Q—protein139—P62249
S—protein139—P62269
T—protein144—P39019
U—protein101—P60866
Z—protein69—P62851
c—protein61—P62857
f—protein59—P62979
g—protein314—P63244
k—protein430—Q8N1G4
z—protein265—Q9BRS2

Ligands and binding sites

  • ZN · Zinc ion · metal · 2 copies · chains y, 2, f

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6ZXE · Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2 · the same entry in another collection · chain H against H, TM-score 1.00

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