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MolNFT v1 · #172270 · protein + RNA

Cryo-EM structure of a late human pre-40S ribosomal subunit - state F1

6ZXD: “Cryo-EM structure of a late human pre-40S ribosomal subunit - state F1”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #172270 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6ZXD
Type
protein + RNA
Length
7,589 residues
Chains
37
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P08708, P08865, P61247, P15880, P62701, P62753, P62081, P62241, P46781, P62280, P62277, P62263, P63220, P62244, P62266, P62847, P42677, P62861, Q9NRX1, Q9ULX3, P62273, P23396, P46782, P46783, P25398, P62841, P62249, P62269, P39019, P60866, P62851, P62857, P62979, P63244, Q9BRS2, Q8N1G4
Ligands
ZN

Structure

electron microscopy · 37 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
2—rna1645——
R—protein122—P08708
A—protein216—P08865
B—protein213—P61247
C—protein218—P15880
E—protein262—P62701
G—protein230—P62753
H—protein186—P62081
I—protein205—P62241
J—protein180—P46781
L—protein151—P62280
N—protein149—P62277
O—protein135—P62263
V—protein82—P63220
W—protein129—P62244
X—protein141—P62266
Y—protein124—P62847
b—protein82—P42677
e—protein47—P62861
x—protein178—Q9NRX1
y—protein325—Q9ULX3
d—protein55—P62273
D—protein225—P23396
F—protein189—P46782
K—protein95—P46783
M—protein119—P25398
P—protein120—P62841
Q—protein139—P62249
S—protein143—P62269
T—protein144—P39019
U—protein101—P60866
Z—protein72—P62851
c—protein61—P62857
f—protein70—P62979
g—protein314—P63244
z—protein292—Q9BRS2
k—protein430—Q8N1G4

Ligands and binding sites

  • ZN · Zinc ion · metal · 2 copies · chains 2, y

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6ZXD · Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1 · the same entry in another collection · chain G against G, TM-score 1.00

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