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MolNFT v1 · #149609 · protein + RNA

Cryo-EM structure of a late human pre-40S ribosomal subunit - mature

6G5H: “Cryo-EM structure of a late human pre-40S ribosomal subunit - mature”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #149609 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6G5H
Type
protein + RNA
Length
6,523 residues
Chains
35
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P08865, P61247, P15880, P62701, P62753, P62081, P62241, P46781, P62280, P62277, P62263, P63220, P62244, P62266, P62847, P62854, P42677, P62273, P62861, P62945, P23396, P46782, P46783, P25398, P62841, P62249, P08708, P62269, P39019, P60866, P62851, P62857, Q5RKT7, P63244
Ligands
ZN

Structure

electron microscopy · 35 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
2—rna1665——
A—protein206—P08865
B—protein213—P61247
C—protein218—P15880
E—protein262—P62701
G—protein230—P62753
H—protein186—P62081
I—protein205—P62241
J—protein180—P46781
L—protein151—P62280
N—protein149—P62277
O—protein135—P62263
V—protein82—P63220
W—protein129—P62244
X—protein141—P62266
Y—protein124—P62847
a—protein101—P62854
b—protein82—P42677
d—protein54—P62273
e—protein56—P62861
h—protein24—P62945
D—protein225—P23396
F—protein189—P46782
K—protein95—P46783
M—protein123—P25398
P—protein120—P62841
Q—protein139—P62249
R—protein132—P08708
S—protein143—P62269
T—protein144—P39019
U—protein101—P60866
Z—protein72—P62851
c—protein61—P62857
f—protein72—Q5RKT7
g—protein314—P63244

Ligands and binding sites

  • ZN · Zinc ion · metal · 3 copies · chains a, d, f

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6G5H · Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature · the same entry in another collection · chain L against L, TM-score 1.00

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