MolNFT v1 · #149461 · protein + RNA
Cryo-EM structure of a late human pre-40S ribosomal subunit - state C
6G18: “Cryo-EM structure of a late human pre-40S ribosomal subunit - state C”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #149461 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6G18
- Type
- protein + RNA
- Length
- 7,718 residues
- Chains
- 35
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P46782, P25398, P62841, P62249, P08708, P62269, P39019, P62851, P62857, P62979, P63244, P08865, P61247, P15880, P62701, P62753, P62081, P62241, P46781, P62280, P62277, P62263, P63220, P62244, P62266, P62847, P42677, P62861, Q9NRX1, Q9ULX3, Q2NL82, Q13895, Q9BVS4, Q96GA3
- Ligands
- ZN
Structure
electron microscopy · 35 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 2 | — | rna | 1658 | — | — |
| F | — | protein | 189 | — | P46782 |
| M | — | protein | 123 | — | P25398 |
| P | — | protein | 120 | — | P62841 |
| Q | — | protein | 122 | — | P62249 |
| R | — | protein | 122 | — | P08708 |
| S | — | protein | 130 | — | P62269 |
| T | — | protein | 144 | — | P39019 |
| Z | — | protein | 72 | — | P62851 |
| c | — | protein | 61 | — | P62857 |
| f | — | protein | 73 | — | P62979 |
| g | — | protein | 313 | — | P63244 |
| A | — | protein | 216 | — | P08865 |
| B | — | protein | 213 | — | P61247 |
| C | — | protein | 218 | — | P15880 |
| E | — | protein | 262 | — | P62701 |
| G | — | protein | 230 | — | P62753 |
| H | — | protein | 186 | — | P62081 |
| I | — | protein | 205 | — | P62241 |
| J | — | protein | 180 | — | P46781 |
| L | — | protein | 151 | — | P62280 |
| N | — | protein | 149 | — | P62277 |
| O | — | protein | 135 | — | P62263 |
| V | — | protein | 82 | — | P63220 |
| W | — | protein | 129 | — | P62244 |
| X | — | protein | 141 | — | P62266 |
| Y | — | protein | 124 | — | P62847 |
| b | — | protein | 82 | — | P42677 |
| e | — | protein | 55 | — | P62861 |
| x | — | protein | 178 | — | Q9NRX1 |
| y | — | protein | 325 | — | Q9ULX3 |
| u | — | protein | 629 | — | Q2NL82 |
| w | — | protein | 249 | — | Q13895 |
| v | — | protein | 325 | — | Q9BVS4 |
| t | — | protein | 127 | — | Q96GA3 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains f, y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q13895 · AlphaFold monomer V2.0 prediction for bystin (Q13895) · a predicted model of the same protein · chain w against A, TM-score 0.97
- P62269 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S18 (P62269) · a predicted model of the same protein · chain S against A, TM-score 0.97
- P62241 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S8 (P62241) · a predicted model of the same protein · chain I against A, TM-score 0.97
- P62263 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S14 (P62263) · a predicted model of the same protein · chain O against A, TM-score 0.96
- P25398 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S12 (P25398) · a predicted model of the same protein · chain M against A, TM-score 0.93
- P62857 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S28 (P62857) · a predicted model of the same protein · chain c against A, TM-score 0.91
- P08708 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S17 (P08708) · a predicted model of the same protein · chain R against A, TM-score 0.90
- Q9BVS4 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase RIO2 (Q9BVS4) · a predicted model of the same protein · chain v against A, TM-score 0.79
- Q96GA3 · AlphaFold monomer V2.0 prediction for protein LTV1 homolog (Q96GA3) · a predicted model of the same protein · chain t against A, TM-score 0.41
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46782
- Every structure of UniProt P25398
- Every structure of UniProt P62841
- Every structure of UniProt P62249
- Every structure of UniProt P08708
- Every structure of UniProt P62269
- Every structure of UniProt P39019
- Every structure of UniProt P62851
- Every structure of UniProt P62857
- Every structure of UniProt P62979
- Every structure of UniProt P63244
- Every structure of UniProt P08865
- Every structure of UniProt P61247
- Every structure of UniProt P15880
- Every structure of UniProt P62701
- Every structure of UniProt P62753
- Every structure of UniProt P62081
- Every structure of UniProt P62241
- Every structure of UniProt P46781
- Every structure of UniProt P62280
- Every structure of UniProt P62277
- Every structure of UniProt P62263
- Every structure of UniProt P63220
- Every structure of UniProt P62244
- Every structure of UniProt P62266
- Every structure of UniProt P62847
- Every structure of UniProt P42677
- Every structure of UniProt P62861
- Every structure of UniProt Q9NRX1
- Every structure of UniProt Q9ULX3
- Every structure of UniProt Q2NL82
- Every structure of UniProt Q13895
- Every structure of UniProt Q9BVS4
- Every structure of UniProt Q96GA3
- Elsewhere: RCSB PDB 6G18 · PDBe 6G18 · UniProt P46782 · UniProt P25398 · UniProt P62841 · UniProt P62249 · UniProt P08708 · UniProt P62269 · UniProt P39019 · UniProt P62851 · UniProt P62857 · UniProt P62979 · UniProt P63244 · UniProt P08865 · UniProt P61247 · UniProt P15880 · UniProt P62701 · UniProt P62753 · UniProt P62081 · UniProt P62241 · UniProt P46781 · UniProt P62280 · UniProt P62277 · UniProt P62263 · UniProt P63220 · UniProt P62244 · UniProt P62266 · UniProt P62847 · UniProt P42677 · UniProt P62861 · UniProt Q9NRX1 · UniProt Q9ULX3 · UniProt Q2NL82 · UniProt Q13895 · UniProt Q9BVS4 · UniProt Q96GA3
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