MolNFT v1 · #137190 · protein
Conformational landscape of the P28-bound human proteasome regulatory particle
5VGZ: “Conformational landscape of the P28-bound human proteasome regulatory particle”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #137190 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VGZ
- Type
- protein
- Length
- 4,603 residues
- Chains
- 17
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P35998, P62191, P62195, P43686, P62333, P17980, Q99460, O43242, O00232, O00231, Q15008, P51665, Q9UNM6, P55036, O00487, P48556, P60896
- Ligands
- ZN
Structure
electron microscopy · 17 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 83 | — | P35998 |
| B | — | protein | 73 | — | P62191 |
| C | — | protein | 118 | — | P62195 |
| D | — | protein | 107 | — | P43686 |
| E | — | protein | 104 | — | P62333 |
| F | — | protein | 101 | — | P17980 |
| U | — | protein | 845 | — | Q99460 |
| V | — | protein | 488 | — | O43242 |
| W | — | protein | 456 | — | O00232 |
| X | — | protein | 385 | — | O00231 |
| Y | — | protein | 378 | — | Q15008 |
| Z | — | protein | 286 | — | P51665 |
| a | — | protein | 374 | — | Q9UNM6 |
| b | — | protein | 191 | — | P55036 |
| c | — | protein | 287 | — | O00487 |
| d | — | protein | 257 | — | P48556 |
| e | — | protein | 70 | — | P60896 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains c
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VGZ · Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle · the same entry in another collection · chain W against W, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35998
- Every structure of UniProt P62191
- Every structure of UniProt P62195
- Every structure of UniProt P43686
- Every structure of UniProt P62333
- Every structure of UniProt P17980
- Every structure of UniProt Q99460
- Every structure of UniProt O43242
- Every structure of UniProt O00232
- Every structure of UniProt O00231
- Every structure of UniProt Q15008
- Every structure of UniProt P51665
- Every structure of UniProt Q9UNM6
- Every structure of UniProt P55036
- Every structure of UniProt O00487
- Every structure of UniProt P48556
- Every structure of UniProt P60896
- Elsewhere: RCSB PDB 5VGZ · PDBe 5VGZ · UniProt P35998 · UniProt P62191 · UniProt P62195 · UniProt P43686 · UniProt P62333 · UniProt P17980 · UniProt Q99460 · UniProt O43242 · UniProt O00232 · UniProt O00231 · UniProt Q15008 · UniProt P51665 · UniProt Q9UNM6 · UniProt P55036 · UniProt O00487 · UniProt P48556 · UniProt P60896
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