MolNFT v1 · #172220 · protein + RNA
EDF1-ribosome complex
6ZVH: “EDF1-ribosome complex”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #172220 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZVH
- Type
- protein + RNA
- Length
- 6,889 residues
- Chains
- 37
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08865, P61247, P23396, P62701, P46782, P62081, P62241, P46783, P62280, P62841, P62249, P08708, P62269, P39019, P60866, P63220, P62266, P62854, P62857, P62273, P63244, P15880, P62753, P46781, P25398, P62277, P62263, P62244, P62847, P62851, P42677, P62861, P62979, Q9NX58, O60869
- Ligands
- MG, ZN
Structure
electron microscopy · 37 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 2 | — | rna | 1740 | — | — |
| A | — | protein | 221 | — | P08865 |
| B | — | protein | 214 | — | P61247 |
| D | — | protein | 227 | — | P23396 |
| E | — | protein | 262 | — | P62701 |
| F | — | protein | 184 | — | P46782 |
| H | — | protein | 186 | — | P62081 |
| I | — | protein | 206 | — | P62241 |
| K | — | protein | 98 | — | P46783 |
| L | — | protein | 153 | — | P62280 |
| P | — | protein | 129 | — | P62841 |
| Q | — | protein | 144 | — | P62249 |
| R | — | protein | 135 | — | P08708 |
| S | — | protein | 145 | — | P62269 |
| T | — | protein | 143 | — | P39019 |
| U | — | protein | 104 | — | P60866 |
| V | — | protein | 83 | — | P63220 |
| X | — | protein | 141 | — | P62266 |
| a | — | protein | 102 | — | P62854 |
| c | — | protein | 64 | — | P62857 |
| d | — | protein | 55 | — | P62273 |
| g | — | protein | 313 | — | P63244 |
| C | — | protein | 222 | — | P15880 |
| G | — | protein | 237 | — | P62753 |
| J | — | protein | 185 | — | P46781 |
| M | — | protein | 122 | — | P25398 |
| N | — | protein | 150 | — | P62277 |
| O | — | protein | 140 | — | P62263 |
| W | — | protein | 129 | — | P62244 |
| Y | — | protein | 131 | — | P62847 |
| Z | — | protein | 75 | — | P62851 |
| b | — | protein | 83 | — | P42677 |
| e | — | protein | 42 | — | P62861 |
| f | — | protein | 67 | — | P62979 |
| x | — | rna | 75 | — | — |
| y | — | protein | 72 | — | Q9NX58 |
| i | — | protein | 110 | — | O60869 |
Ligands and binding sites
- MG · Magnesium ion · metal · 30 copies · chains 2, a, I, O, G
- ZN · Zinc ion · metal · 3 copies · chains a, d, f
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZVH · EDF1-ribosome complex · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08865
- Every structure of UniProt P61247
- Every structure of UniProt P23396
- Every structure of UniProt P62701
- Every structure of UniProt P46782
- Every structure of UniProt P62081
- Every structure of UniProt P62241
- Every structure of UniProt P46783
- Every structure of UniProt P62280
- Every structure of UniProt P62841
- Every structure of UniProt P62249
- Every structure of UniProt P08708
- Every structure of UniProt P62269
- Every structure of UniProt P39019
- Every structure of UniProt P60866
- Every structure of UniProt P63220
- Every structure of UniProt P62266
- Every structure of UniProt P62854
- Every structure of UniProt P62857
- Every structure of UniProt P62273
- Every structure of UniProt P63244
- Every structure of UniProt P15880
- Every structure of UniProt P62753
- Every structure of UniProt P46781
- Every structure of UniProt P25398
- Every structure of UniProt P62277
- Every structure of UniProt P62263
- Every structure of UniProt P62244
- Every structure of UniProt P62847
- Every structure of UniProt P62851
- Every structure of UniProt P42677
- Every structure of UniProt P62861
- Every structure of UniProt P62979
- Every structure of UniProt Q9NX58
- Every structure of UniProt O60869
- Elsewhere: RCSB PDB 6ZVH · PDBe 6ZVH · UniProt P08865 · UniProt P61247 · UniProt P23396 · UniProt P62701 · UniProt P46782 · UniProt P62081 · UniProt P62241 · UniProt P46783 · UniProt P62280 · UniProt P62841 · UniProt P62249 · UniProt P08708 · UniProt P62269 · UniProt P39019 · UniProt P60866 · UniProt P63220 · UniProt P62266 · UniProt P62854 · UniProt P62857 · UniProt P62273 · UniProt P63244 · UniProt P15880 · UniProt P62753 · UniProt P46781 · UniProt P25398 · UniProt P62277 · UniProt P62263 · UniProt P62244 · UniProt P62847 · UniProt P62851 · UniProt P42677 · UniProt P62861 · UniProt P62979 · UniProt Q9NX58 · UniProt O60869
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