GL1X · GenesisL1 explorer

MolNFT v1 · #171971 · protein + RNA

SARS-cov-2 NSP1 bound to a pre-40S-like ribosome complex

6ZMT: “SARS-cov-2 NSP1 bound to a pre-40S-like ribosome complex”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #171971 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6ZMT
Type
protein + RNA
Length
6,923 residues
Chains
35
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P08865, P61247, P15880, P62701, P23396, P62753, P62081, P62241, P46781, P46782, P62280, P46783, P62277, P25398, P62263, P62841, P62249, P08708, P62269, P39019, P60866, P62244, P62266, P62847, P63220, P62851, P42677, P62857, P62861, P62273, P62979, P63244, P0DTD1, Q2NL82
Ligands
ZN

Structure

electron microscopy · 35 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
B—protein206—P08865
C—protein213—P61247
D—protein218—P15880
E—protein262—P62701
F—protein225—P23396
G—protein230—P62753
H—protein186—P62081
I—protein205—P62241
J—protein180—P46781
K—protein189—P46782
L—protein151—P62280
M—protein95—P46783
N—protein149—P62277
O—protein123—P25398
P—protein122—P62263
Q—protein120—P62841
R—protein139—P62249
S—protein130—P08708
T—protein143—P62269
U—protein144—P39019
V—protein101—P60866
W—protein129—P62244
X—protein141—P62266
Y—protein124—P62847
Z—protein82—P63220
a—protein72—P62851
b—protein82—P42677
d—protein61—P62857
e—protein56—P62861
f—protein54—P62273
g—protein64—P62979
j—protein314—P63244
2—rna1569——
i—protein29—P0DTD1
u—protein615—Q2NL82

Ligands and binding sites

  • ZN · Zinc ion · metal · 2 copies · chains f, g

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6ZMT · SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex · the same entry in another collection · chain L against L, TM-score 1.00

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