UniProt P31153
S-adenosylmethionine synthase isoform type-2 (P31153)
S-adenosylmethionine synthase isoform type-2 (UniProt P31153), EC 2.5.1.6: 94 experimental structures and 1 predicted model on GenesisL1, 55 ligands bound, 395 pockets. Binding sites, druggability and experiment against…
- UniProt
- P31153
- Protein
- S-adenosylmethionine synthase isoform type-2
- EC
- 2.5.1.6
- Experimental structures
- 94
- Predicted models
- 1
- Ligands
- 55
- Pockets
- 395 · 25 records with a druggable one
Structures
95 records of P31153 in the MolNFT archive: 94 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2P02 | Crystal structure of the alpha subunit of human S-adenosylmethionine synthetase 2 | x-ray diffraction | A | CL, SAM | 2 (best 0.37) |
| 2P02 | Crystal structure of the alpha subunit of human S-adenosylmethionine synthetase 2 | x-ray diffraction | A | CL, SAM | 2 (best 0.37) |
| 4KTT | Structural insights of MAT enzymes: MATa2b complexed with SAM | x-ray diffraction | A, B, C, D | SAM, PO4, MG | 17 (best 0.83) |
| 4KTT | Structural insights of mat enzymes: MATA2B complexed with SAM | x-ray diffraction | A, B, C, D | SAM, PO4, MG | 17 (best 0.83) |
| 4KTV | Structural insights of MAT enzymes: MATa2b complexed with adenosine and pyrophosphate | x-ray diffraction | A, B, C, D | ADN, PO4, POP, MG | 19 (best 0.83) |
| 4KTV | Structural insights of mat enzymes: MATA2B complexed with adenosine and pyrophosphate | x-ray diffraction | A, B, C, D | ADN, PO4, POP, MG | 19 (best 0.83) |
| 4NDN | Structural insights of MAT enzymes: MATa2b complexed with SAM and PPNP | x-ray diffraction | A, B, C, D | MG, PPK, SAM | 18 (best 0.82) |
| 4NDN | Structural insights of mat enzymes: MATA2B complexed with SAM and ppnp | x-ray diffraction | A, B, C, D | MG, PPK, SAM | 18 (best 0.82) |
| 5A19 | The structure of MAT2A in complex with PPNP. | x-ray diffraction | A | PPK, MG, K | — |
| 5A19 | The structure of MAT2A in complex with ppnp. | x-ray diffraction | A | PPK, MG, K | — |
| 5A1G | The structure of Human MAT2A in complex with S-adenosylethionine and PPNP. | x-ray diffraction | A | PPK, S7M, K, MG | 2 (best 0.35) |
| 5A1G | The structure of human MAT2A in complex with S-adenosylethionine and ppnp. | x-ray diffraction | A | PPK, S7M, K, MG | 2 (best 0.35) |
| 5A1I | The structure of Human MAT2A in complex with SAM, Adenosine, Methionine and PPNP. | x-ray diffraction | A | MET, PPK, MG, K, SAM, ADN | 1 (best 0.30) |
| 5A1I | The structure of human MAT2A in complex with SAM, adenosine, methionine and ppnp. | x-ray diffraction | A | MET, PPK, MG, K, SAM, ADN | 1 (best 0.30) |
| 5UGH | Crystal structure of Mat2a bound to the allosteric inhibitor PF-02929366 | x-ray diffraction | A, B, C, D | 8AJ | 14 (best 0.78) |
| 5UGH | Crystal structure of MAT2A bound to the allosteric inhibitor pf- 02929366 | x-ray diffraction | A, B, C, D | 8AJ | 14 (best 0.78) |
| 6FAJ | The structure of Human Methionine Adenosyltransferase II in apo state | x-ray diffraction | A, B | — | 6 (best 0.74) |
| 6FAJ | The structure of human methionine adenosyltransferase II in apo state | x-ray diffraction | A, B | — | 6 (best 0.74) |
| 6FBN | Human Methionine Adenosyltransferase II mutant (Q113A) | x-ray diffraction | A, B | SAM, PPK, MG, K | 4 (best 0.82) |
| 6FBN | Human methionine adenosyltransferase II mutant (Q113A) | x-ray diffraction | A, B | SAM, PPK, MG, K | 4 (best 0.82) |
| 6FBO | Human Methionine Adenosyltransferase II mutant (S114A) in I222 crystal form | x-ray diffraction | A | PPK, MG, K, ADN | 1 (best 0.31) |
| 6FBO | Human methionine adenosyltransferase II mutant (S114A) in I222 crystal form | x-ray diffraction | A | PPK, MG, K, ADN | 1 (best 0.31) |
| 6FBP | Human Methionine Adenosyltransferase II mutant (S114A) in P22121 crystal form | x-ray diffraction | A, B | K, MG, PPK, ADN | 8 (best 0.82) |
| 6FBP | Human methionine adenosyltransferase II mutant (S114A) in P22121 crystal form | x-ray diffraction | A, B | K, MG, PPK, ADN | 8 (best 0.82) |
| 6FCB | Human Methionine Adenosyltransferase II mutant (P115G) | x-ray diffraction | A | PPK, MG, K, SAM | 3 (best 0.38) |
| 6FCB | Human methionine adenosyltransferase II mutant (P115G) | x-ray diffraction | A | PPK, MG, K, SAM | 3 (best 0.38) |
| 6FCD | Human Methionine Adenosyltransferase II mutant (R264A) | x-ray diffraction | A | MG, K, ADN, PPV | 1 (best 0.33) |
| 6FCD | Human methionine adenosyltransferase II mutant (R264A) | x-ray diffraction | A | MG, K, ADN, PPV | 1 (best 0.33) |
| 6FWB | Crystal structure of Mat2A at 1.79 Angstron resolution | x-ray diffraction | B, A, C, D | SO4, NA | 14 (best 0.75) |
| 6FWB | Crystal structure of MAT2A at 1.79 angstron resolution | x-ray diffraction | B, A, C, D | SO4, NA | 14 (best 0.75) |
| 6G6R | Human Methionine Adenosyltransferase II with SAMe and PPNP | x-ray diffraction | A | PPK, MG, K, SAM | 1 (best 0.33) |
| 6G6R | Human methionine adenosyltransferase II with same and ppnp | x-ray diffraction | A | PPK, MG, K, SAM | 1 (best 0.33) |
| 6P9V | Crystal Structure of hMAT Mutant K289L | x-ray diffraction | A | ADN, K, MG, POP | 2 (best 0.38) |
| 6P9V | Crystal structure of hmat mutant K289L | x-ray diffraction | A | ADN, K, MG, POP | 2 (best 0.38) |
| 6WKB | Human S-adenosylmethionine synthetase co-crystallized with UppNHp and Met | x-ray diffraction | A, B | U4P, MED, MET | 6 (best 0.84) |
| 6WKB | Human S-adenosylmethionine synthetase co-crystallized with uppnhp and met | x-ray diffraction | A, B | U4P, MED, MET | 6 (best 0.84) |
| 7BHR | Crystal structure of MAT2a with triazi fragment 1 bound in the allosteric site | x-ray diffraction | A | TQE, SAM | 1 (best 0.32) |
| 7BHR | Crystal structure of MAT2A with triazinone fragment 1 bound in the allosteric site | x-ray diffraction | A | TQE, SAM | 1 (best 0.32) |
| 7BHS | Crystal structure of MAT2a with quinazoline fragment 2 bound in the allosteric site | x-ray diffraction | A | TNZ, SAM | 1 (best 0.33) |
| 7BHS | Crystal structure of MAT2A with quinazoline fragment 2 bound in the allosteric site | x-ray diffraction | A | TNZ, SAM | 1 (best 0.33) |
| 7BHT | Crystal structure of MAT2a with quinazoli fragment 5 bound in the allosteric site | x-ray diffraction | A | TO8, SAM, CL | 1 (best 0.33) |
| 7BHT | Crystal structure of MAT2A with quinazolinone fragment 5 bound in the allosteric site | x-ray diffraction | A | TO8, SAM, CL | 1 (best 0.33) |
| 7BHU | Crystal structure of MAT2a with elaborated fragment 26 bound in the allosteric site | x-ray diffraction | A | TOW, SAM | 1 (best 0.31) |
| 7BHU | Crystal structure of MAT2A with elaborated fragment 26 bound in the allosteric site | x-ray diffraction | A | TOW, SAM | 1 (best 0.31) |
| 7BHV | Crystal structure of MAT2a bound to allosteric inhibitor and in vivo tool compound 28 | x-ray diffraction | A | TQB, SAM | 1 (best 0.32) |
| 7BHV | Crystal structure of MAT2A bound to allosteric inhibitor and in vivo tool compound 28 | x-ray diffraction | A | TQB, SAM | 1 (best 0.32) |
| 7BHW | Crystal structure of MAT2a bound to allosteric inhibitor (compound 29) | x-ray diffraction | A | TNW, SAM | 1 (best 0.32) |
| 7BHW | Crystal structure of MAT2A bound to allosteric inhibitor (compound 29) | x-ray diffraction | A | TNW, SAM | 1 (best 0.32) |
| 7BHX | Crystal structure of MAT2a bound to allosteric inhibitor (compound 31) | x-ray diffraction | A | TO5, SAM, CL | 1 (best 0.33) |
| 7BHX | Crystal structure of MAT2A bound to allosteric inhibitor (compound 31) | x-ray diffraction | A | TO5, SAM, CL | 1 (best 0.33) |
| 7KCC | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | CL, SAM, WBG | 2 (best 0.37) |
| 7KCC | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | CL, SAM, WBG | 2 (best 0.37) |
| 7KCE | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | J41, SAM, CL | 2 (best 0.36) |
| 7KCE | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | J41, SAM, CL | 2 (best 0.36) |
| 7KCF | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | J4A, SAM | 2 (best 0.37) |
| 7KCF | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | J4A, SAM | 2 (best 0.37) |
| 7KDA | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | SAM, CL, WBM | 2 (best 0.39) |
| 7KDA | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | SAM, CL, WBM | 2 (best 0.39) |
| 7KDB | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | WBS, CL, SAM | 2 (best 0.36) |
| 7KDB | Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and… | x-ray diffraction | A | WBS, CL, SAM | 2 (best 0.36) |
35 records more on the page itself.
Ligands
- SAM · S-adenosylmethionine · in 61 records
- MG · Magnesium ion · in 38 records
- K · Potassium ion · in 29 records
- CL · Chloride ion · in 26 records
- PPK · (diphosphono)aminophosphonic acid · in 19 records
- ADN · Adenosine · in 13 records
- NA · Sodium ion · in 10 records
- MTA · 5'-deoxy-5'-methylthioadenosine · in 9 records
- ALA · Alanine · in 8 records
- MET · Methionine · in 4 records
- PO4 · Phosphate ion · in 4 records
- POP · Pyrophosphate 2- · in 4 records
- SO4 · Sulfate ion · in 4 records
- 2PN · Imidodiphosphoric acid · in 2 records
- 7U2 · (3'R)-N-(cyclopropylmethyl)-1'-[(2-fluorophenyl) methyl]-4-methyl-5H,7H-spiro[pyrano[4,3-d]pyrimidine-8,3'-pyrrolidin]-2-amine · in 2 records
- 7UB · (3'R)-2-[(cyclopropylmethyl)amino]-6-(4-methoxyphenyl)-1'-[(1H-pyrazol-5-yl)methyl]-5,6-dihydro-7H-spiro[pyrido[4,3-d]pyrimidine-8,3'-pyrrolidin]-7-one · in 2 records
- 7UI · 8-(4-bromophenyl)-6-(4-methoxyphenyl)-2-[2,2,2-tris(fluoranyl)ethylamino]pyrido[4,3-d]pyrimidin-7-ol · in 2 records
- 7UN · (8R)-8-(4-chlorophenyl)-6-(2-methyl-2H-indazol-5-yl)-2-[(2,2,2-trifluoroethyl)amino]-5,8-dihydropyrido[4,3-d]pyrimidin-7(6H)-one · in 2 records
- 8AJ · 2-(7-chloro-5-phenyl[1,2,4]triazolo[4,3-a]quinolin-1-yl)-N,N-dimethylethan-1-amine · in 2 records
- J41 · 5-methyl-2,3-diphenylpyrazolo[1,5-a]pyrimidin-7(4H)-one · in 2 records
- J4A · 6-(4-hydroxyphenyl)-5-methyl-2-phenyl-3-(piperidin-1-yl)pyrazolo[1,5-a]pyrimidin-7(4H)-one · in 2 records
- MED · D-methionine · in 2 records
- MGF · Trifluoromagnesate · in 2 records
- P3G · 3,6,9,12,15-pentaoxaheptadecane · in 2 records
- PPV · Pyrophosphate · in 2 records
- S7M · [(3S)-3-amino-3-carboxypropyl]{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}ethyls ulfonium · in 2 records
- TNW · 7-chloranyl-4-(dimethylamino)-1-(3-methylphenyl) quinazolin-2-one · in 2 records
- TNZ · 6-chloranyl-2-methoxy-4-phenyl-quinazoline · in 2 records
- TO5 · 7-chloranyl-4-(dimethylamino)-1-pyridin-3-yl-quinazolin-2-one · in 2 records
- TO8 · 7-chloranyl-4-(dimethylamino)-1~{H}-quinazolin-2-one · in 2 records
Experiment against prediction
- 6FCB chain A against the predicted model P31153: TM-score 1.00, RMSD 0.41 Å
- 6FCB chain A against the predicted model P31153: TM-score 1.00, RMSD 0.41 Å
- 6FBO chain A against the predicted model P31153: TM-score 1.00, RMSD 0.43 Å
- 6FBO chain A against the predicted model P31153: TM-score 1.00, RMSD 0.43 Å
- 6P9V chain A against the predicted model P31153: TM-score 1.00, RMSD 0.44 Å
- 6P9V chain A against the predicted model P31153: TM-score 1.00, RMSD 0.44 Å
- 7LNH chain A against the predicted model P31153: TM-score 1.00, RMSD 0.46 Å
- 7LNH chain A against the predicted model P31153: TM-score 1.00, RMSD 0.46 Å
- 8P4H chain C against the predicted model P31153: TM-score 1.00, RMSD 0.47 Å
- 6WKB chain A against the predicted model P31153: TM-score 1.00, RMSD 0.46 Å
Elsewhere
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