Ligand · PPK
PPK · (diphosphono)aminophosphonic acid
PPK, (diphosphono)aminophosphonic acid (H6 N O9 P3, 257.0 g/mol), in the MolNFT structures on GenesisL1: bound in 13 records (12 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…
- Component
- PPK
- Formula
- H6 N O9 P3
- Class
- ligand
- Structures
- 13
- PDB entries
- 12
Binding sites
PPK in 13 structures; the first of them:
- 5A19 · The structure of MAT2A in complex with PPNP. · PPK A403 · binds GLU23, HIS29, ASP31, LYS181, ASP258, ARG264, LYS265
- 7R3B · S-adenosylmethionine synthetase from Lactobacillus plantarum complexed with AMPPNP… · PPK A502 · binds GLU10, HIS16, ASP18, LYS176, ASP250, ALA251, ARG256, LYS257 and 5 more
- 8SWA · Crystal structure of the human S-adenosylmethionine synthetase 1 in complex with SAM and… · PPK A601 · binds HIS29, ASP31, LYS181, ASP258, ARG264, LYS265
- 6FBN · Human methionine adenosyltransferase II mutant (Q113A) · PPK B402 · binds ASP134, GLY279, GLY280, ALA281, LYS285, ASP291, HIS29, ASP31 and 5 more
- 6FBO · Human methionine adenosyltransferase II mutant (S114A) in I222 crystal form · PPK A401 · binds HIS29, ASP31, LYS181, ASP258, ARG264, LYS265
- 6FBP · Human methionine adenosyltransferase II mutant (S114A) in P22121 crystal form · PPK B401 · binds GLU57, ASP134, GLY279, GLY280, ALA281, LYS285, ASP291, HIS29 and 5 more
- 6FCB · Human methionine adenosyltransferase II mutant (P115G) · PPK A401 · binds HIS29, ASP31, LYS181, ASP258, ARG264, LYS265, SAM405
- 6G6R · Human methionine adenosyltransferase II with same and ppnp · PPK A401 · binds HIS29, ASP31, LYS181, ASP258, ARG264, LYS265, SAM406
- 6RKC · Inter-dimeric interface controls function and stability of S- methionine… · PPK A405 · binds HIS16, ASP18, LYS160, ASP231, ARG237, LYS238, SAM404, ASP113 and 5 more
- 6VD1 · Crystal structure of arabidopsis thaliana S-adenosylmethionine synthase 2 (ATMAT2) in… · PPK A401 · binds HIS15, ASP17, LYS169, ASP246, ARG252, LYS253, SAM409, GLU43 and 5 more
- 7LL3 · S-adenosylmethionine synthetase co-crystallized with uppnhp · PPK A705 · binds HIS14, ASP16, LYS165, ASP238, CYS239, ARG244, LYS245, GLU42 and 5 more
- 7LNN · E. COLI S-adenosyl methionine transferase co-crystallized with… · PPK A704 · binds GLU8, HIS14, ASP16, LYS165, ASP238, ARG244, LYS245, ASP118 and 5 more
- 7R3B · S-adenosylmethionine synthetase from lactobacillus plantarum complexed with amppnp… · PPK A502 · binds HIS16, ASP18, LYS176, ASP250, ALA251, ARG256, LYS257, GLY271 and 3 more
Residues it binds most
ASP 29, LYS 29, GLY 23, ALA 24, ARG 29, HIS 29, SAM 15, GLU 11, CYS 1 (residue and the binding sites it lines).
Found with
- MG · Magnesium ion
- K · Potassium ion
- EDO · 1,2-ethanediol
- PEG · Di(hydroxyethyl)ether
- PG4 · Tetraethylene glycol
- ADN · Adenosine
- ANP · Phosphoaminophosphonic acid-adenylate ester
- SAM · S-adenosylmethionine
- PHE · Phenylalanine
- UNP · 5'-O-[(R)-hydroxy{[(s)-hydroxy(phosphonoamino) phosphoryl]oxy}phosphoryl]uridine
- PO4 · Phosphate ion
- 1PE · Pentaethylene glycol
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