UniProt P02701
Avidin (P02701)
Avidin (UniProt P02701): 65 experimental structures and 1 predicted model on GenesisL1, 11 ligands bound, 24 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P02701
- Protein
- Avidin
- Experimental structures
- 65
- Predicted models
- 1
- Ligands
- 11
- Pockets
- 24 · 3 records with a druggable one
Structures
66 records of P02701 in the MolNFT archive: 65 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1AVD | Three-dimensional structure of the tetragonal crystal form of egg-white avidin in its functional… | x-ray diffraction | A, B | — | — |
| 1AVD | Three-dimensional structure of the tetragonal crystal form of egg- white avidin in its functional… | x-ray diffraction | A, B | — | — |
| 1AVE | Crystal structure of hen egg-white apo-avidin in relation to its thermal stability properties | x-ray diffraction | A, B | — | — |
| 1AVE | Crystal structure of hen egg-white apo-avidin in relation to its thermal stability properties | x-ray diffraction | A, B | — | — |
| 1IJ8 | Crystal structure of lite avidin-bni complex | x-ray diffraction | A, B | — | — |
| 1IJ8 | Crystal structure of lite avidin-bni complex | x-ray diffraction | A, B | — | — |
| 1LDO | avidin-norbioitn complex | x-ray diffraction | A, B | — | — |
| 1LDO | Avidin-norbioitn complex | x-ray diffraction | A, B | — | — |
| 1LDQ | avidin-homobiotin complex | x-ray diffraction | A, B | — | — |
| 1LDQ | Avidin-homobiotin complex | x-ray diffraction | A, B | — | — |
| 1LEL | The avidin BCAP complex | x-ray diffraction | A, B | — | — |
| 1LEL | The avidin bcap complex | x-ray diffraction | A, B | — | — |
| 1NQN | Structure of Avm-W110K (W110K mutant of avidin) | x-ray diffraction | A, B | — | — |
| 1NQN | Structure of avm-W110K (W110K mutant of avidin) | x-ray diffraction | A, B | — | — |
| 1RAV | Recombinant avidin | x-ray diffraction | A, B | — | — |
| 1RAV | Recombinant avidin | x-ray diffraction | A, B | — | — |
| 1VYO | Crystal structure of avidin | x-ray diffraction | A, B | — | — |
| 1VYO | Crystal structure of avidin | x-ray diffraction | A, B | — | — |
| 2A5B | Avidin complexed with 8-oxodeoxyguanosine | x-ray diffraction | A, B | — | — |
| 2A5B | Avidin complexed with 8-oxodeoxyguanosine | x-ray diffraction | A, B | — | — |
| 2A5C | Structure of Avidin in complex with the ligand 8-oxodeoxyadenosine | x-ray diffraction | A, B | — | — |
| 2A5C | Structure of avidin in complex with the ligand 8-oxodeoxyadenosine | x-ray diffraction | A, B | — | — |
| 2A8G | Structure of Avidin in complex with the ligand deoxyguanosine | x-ray diffraction | A, B | — | — |
| 2A8G | Structure of avidin in complex with the ligand deoxyguanosine | x-ray diffraction | A, B | — | — |
| 2AVI | Three-dimensional structures of avidin and the avidin-biotin complex | x-ray diffraction | A, B | — | — |
| 2AVI | Three-dimensional structures of avidin and the avidin-biotin complex | x-ray diffraction | A, B | — | — |
| 2C4I | Crystal structure of engineered avidin | x-ray diffraction | A | — | — |
| 2C4I | Crystal structure of engineered avidin | x-ray diffraction | A | — | — |
| 2CAM | Avidin mutant (K3E,K9E,R26D,R124L) | x-ray diffraction | A, B | — | — |
| 2CAM | Avidin mutant (K3E,K9E,R26D,R124L) | x-ray diffraction | A, B | — | — |
| 2MF6 | Solution NMR structure of Chimeric Avidin, ChiAVD(I117Y), in the biotin bound form | solution nmr | A, D, B, C | — | — |
| 2MF6 | Solution NMR structure of chimeric avidin, CHIAVD(I117Y), in the biotin bound form | solution nmr | A, D, B, C | — | — |
| 3FDC | Crystal Structure of Avidin | x-ray diffraction | A, B | — | — |
| 3FDC | Crystal structure of avidin | x-ray diffraction | A, B | — | — |
| 3MM0 | Crystal structure of chimeric avidin | x-ray diffraction | A, B, C, D, E, F, G, H, I, K, M, N | — | — |
| 3MM0 | Crystal structure of chimeric avidin | x-ray diffraction | A, B, C, D, E, F, G, H, I, K, M, N | — | — |
| 3VGW | Crystal structure of monoAc-biotin-avidin complex | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 3VGW | Crystal structure of monoac-biotin-avidin complex | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 3VHH | Crystal structure of DiMe-biotin-avidin complex | x-ray diffraction | A, B, C, D | — | — |
| 3VHH | Crystal structure of dime-biotin-avidin complex | x-ray diffraction | A, B, C, D | — | — |
| 3VHI | Crystal structure of monoZ-biotin-avidin complex | x-ray diffraction | A, B, C, D | — | — |
| 3VHI | Crystal structure of monoz-biotin-avidin complex | x-ray diffraction | A, B, C, D | — | — |
| 3VHM | Crystal structure of NPC-biotin-avidin complex | x-ray diffraction | A, B, C, D | — | — |
| 3VHM | Crystal structure of npc-biotin-avidin complex | x-ray diffraction | A, B, C, D | — | — |
| 4I60 | Crystal structure of avidin - biotinylruthenocene complex | x-ray diffraction | A | — | — |
| 4I60 | Crystal structure of avidin - biotinylruthenocene complex | x-ray diffraction | A | — | — |
| 4JHQ | Crystal structure of avidin - 6-(6-biotinamidohexanamido)hexanoylferrocene complex | x-ray diffraction | A, B | — | — |
| 4JHQ | Crystal structure of avidin - 6-(6-biotinamidohexanamido) hexanoylferrocene complex | x-ray diffraction | A, B | — | — |
| 4U46 | Crystal structure of an avidin mutant | x-ray diffraction | A, B | — | — |
| 4U46 | Crystal structure of an avidin mutant | x-ray diffraction | A, B | — | — |
| 5CHK | Crystal structure of avidin - HABA complex (hexagonal crystal form) | x-ray diffraction | A | NAG, 55R | 1 (best 0.46) |
| 5CHK | Crystal structure of avidin - haba complex (hexagonal crystal form) | x-ray diffraction | A | — | — |
| 5HLM | Crystal structure of avidin complex with a ferrocene biotin derivative | x-ray diffraction | A, B, C, D | B9F, NAG | — |
| 5HLM | Crystal structure of avidin complex with a ferrocene biotin derivative | x-ray diffraction | A, B, C, D | — | — |
| 5IRU | Crystal structure of avidin in complex with 1-biotinylpyrene | x-ray diffraction | A, B, C, D | NAG, B9P | 7 (best 0.68) |
| 5IRU | Crystal structure of avidin in complex with 1-biotinylpyrene | x-ray diffraction | A, B, C, D | — | — |
| 5IRW | Crystal structure of avidin in complex with 1-desthiobiotinylpyrene | x-ray diffraction | A, B, C, D | NAG, D9P | 7 (best 0.67) |
| 5IRW | Crystal structure of avidin in complex with 1-desthiobiotinylpyrene | x-ray diffraction | A, B, C, D | — | — |
| 5LUR | An avidin mutant | x-ray diffraction | A, B | STR, CL | 2 (best 0.41) |
| 5LUR | An avidin mutant | x-ray diffraction | A, B | STR, CL | — |
6 records more on the page itself.
Ligands
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 9 records
- CL · Chloride ion · in 2 records
- HBF · ferrocene homobiotin derivative · in 2 records
- IOD · Iodide ion · in 2 records
- STR · Progesterone · in 2 records
- 55R · 2-[2-(4-oxocyclohexa-2,5-dien-1-ylidene)hydrazinyl]benzoic acid · in 1 record
- B9F · [(1,2,3,4,5-eta)-cyclopentadienyl]{(1,2,3,4,5-eta)-1-[1-hydroxy-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentyl]cyclopentadienyl}iron · in 1 record
- B9P · 1-biotinylpyrene · in 1 record
- D9P · 1-desthiobiotinylpyrene · in 1 record
- KFL · 6-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(2,2,6,6-tetramethyl-1-oxidanyl-piperidin-4-yl)hexanamide · in 1 record
- V8M · N-[2-(2-hydroxy-5-nitrophenyl)ethyl]-5-[(3as,4s,6as)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide · in 1 record
Experiment against prediction
- 3MM0 chain H against the predicted model P56734: TM-score 0.99, RMSD 0.40 Å
- 3MM0 chain H against the predicted model P56734: TM-score 0.99, RMSD 0.40 Å
- 3MM0 chain E against the predicted model P56734: TM-score 0.99, RMSD 0.42 Å
- 3MM0 chain E against the predicted model P56734: TM-score 0.99, RMSD 0.42 Å
- 3MM0 chain I against the predicted model P56734: TM-score 0.99, RMSD 0.46 Å
- 3MM0 chain I against the predicted model P56734: TM-score 0.99, RMSD 0.46 Å
- 3MM0 chain B against the predicted model P56734: TM-score 0.99, RMSD 0.45 Å
- 3MM0 chain B against the predicted model P56734: TM-score 0.99, RMSD 0.45 Å
- 3MM0 chain A against the predicted model P56734: TM-score 0.99, RMSD 0.46 Å
- 3MM0 chain A against the predicted model P56734: TM-score 0.99, RMSD 0.46 Å
Elsewhere
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