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Ligand · IOD

IOD · Iodide ion

IOD, Iodide ion (I -1, 126.9 g/mol), in the MolNFT structures on GenesisL1: bound in 674 records (519 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
IOD
Formula
I -1
Class
ion
Structures
674
PDB entries
519

Binding sites

IOD in 674 structures; the first of them:

  • 4XR3 · Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- GC(6) swapped. · IOD A1001 · binds HIS31, GLN101, VAL102, ASP103, SER106, ARG265
  • 4XXS · Crystal structure of BACE1 with a pyrazole-substituted tetrahydropyran thioamidine · IOD A402 · binds HIS45, ILE102, THR103, GLU104, SER105, PHE109
  • 4Y0L · Mycobacterial membrane protein MmpL11D2 · IOD A601 · binds ARG449, HIS450, ALA453
  • 4ZVI · Gyrase B in complex with 4,5-dibromopyrrolamide-based inhibitor · IOD A402 · binds ASN271, ILE273, PRO330, PHE332, LYS337
  • 5BVW · Fragment-based discovery of potent and selective DDR1/2 inhibitors · IOD A1001 · binds PHE845, GLY846, GLN847, LEU848
  • 5C5A · Crystal Structure of HDM2 in complex with Nutlin-3a · IOD A204 · binds GLU25, THR26, THR49, MET50, LYS51
  • 5CEG · X-ray structure of toxin/anti-toxin complex from Mesorhizobium opportunistum · IOD A102 · binds ARG54, ARG57
  • 5CLM · 1,4-Oxazine BACE1 inhibitors · IOD A402 · binds TYR51

Residues it binds most

ARG 1430, LYS 1136, PRO 820, SER 747, ASN 723, GLY 651, THR 645, LEU 614, GLU 656, HIS 609 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • EDO · 1,2-ethanediol
  • CL · Chloride ion
  • K · Potassium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MG · Magnesium ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • NA · Sodium ion
  • CA · Calcium ion
  • BMA · beta-D-mannopyranose
  • PGE · Triethylene glycol

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