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Ligand · V8M

V8M · N-[2-(2-hydroxy-5-nitrophenyl)ethyl]-5-[(3aS,4S,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide

V8M, N-[2-(2-hydroxy-5-nitrophenyl)ethyl]-5-[(3aS,4S,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide (C18 H24 N4 O5 S, 408.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site…

Component
V8M
Formula
C18 H24 N4 O5 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

V8M in 2 structures; the first of them:

  • 6XND · Avidin-Biotin-Phenol · V8M A201 · binds ASN12, LEU14, SER16, TYR33, THR35, VAL37, THR38, ALA39 and 13 more
  • 6XND · Avidin-biotin-phenol · V8M A202 · binds ASN12, LEU14, SER16, TYR33, THR35, VAL37, THR38, ALA39 and 13 more

Residues it binds most

SER 8, THR 8, TRP 8, ASN 8, LEU 8, PHE 8, ALA 8, ARG 8, TYR 8, VAL 8 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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