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Ligand · GNG

GNG · 2'-deoxy-guanosine

GNG, 2'-deoxy-guanosine (C10 H13 N5 O4, 267.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GNG
Formula
C10 H13 N5 O4
Class
ligand
Structures
2
PDB entries
2

Binding sites

GNG in 2 structures; the first of them:

  • 5FBG · S1 nuclease from Aspergillus oryzae, mutant D65N, in complex with phosphate… · GNG B701 · binds PHE81, ASP83, LEU144, HIS145, ALA151, GLY152, ASN154, HIS168
  • 6P2H · Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches · GNG A101 · binds G21, U22, C47, C48, U49, C50, C51, A52 and 4 more

Residues it binds most

C 1, A 1, HIS 1, U 1, ALA 1, ASN 1, ASP 1, G 1, GLY 1, LEU 1 (residue and the binding sites it lines).

Found with

  • DCZ · 2'-deoxycytidine
  • NCO · Cobalt hexammine(iii)
  • MG · Magnesium ion
  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion

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