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Ligand · DCZ

DCZ · 2'-deoxycytidine

DCZ, 2'-deoxycytidine (C9 H13 N3 O4, 227.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DCZ
Formula
C9 H13 N3 O4
Class
ligand
Structures
3
PDB entries
2

Binding sites

DCZ in 3 structures; the first of them:

  • 5FBD · S1 nuclease from Aspergillus oryzae in complex with phosphate and 2'-deoxycytidine · DCZ A701 · binds LYS68, TYR69, PHE81, ASP83, LEU144, HIS145, ALA151, GLY152 and 2 more
  • 6NKA · Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with… · DCZ A302 · binds GLY12, GLY14, VAL17, GLY169, SER170, LEU196, PRO197, ALA198 and 3 more
  • 6NKA · Crystal structure of mycobacterium tuberculosis dethiobiotin synthetase in complex with… · DCZ A302 · binds GLY12, GLY14, GLY169, SER170, LEU196, PRO197, ALA198, GLY199 and 2 more

Residues it binds most

GLY 9, ALA 9, LEU 9, SER 8, PRO 8, VAL 7, HIS 1, ASN 1, ASP 1, LYS 1 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion

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