UDP · Uridine-5'-diphosphate

Binding sites

UDP in 313 structures; the first of them:

• 5BJU · X-ray structure of the PglF dehydratase from Campylobacter jejuni in complex with UDP and… · UDP A701 · binds LYS397, ASN433, GLY439, SER440, VAL441, LYS444, PHE445, THR456 and 7 more
• 5BJX · X-ray structure of the PglF 4,6-dehydratase from campylobacter jejuni, variant T395V, in… · UDP A701 · binds LYS397, ASN433, GLY439, SER440, VAL441, LYS444, PHE445, THR456 and 7 more
• 5BJY · x-ray structure of the PglF 4,5-dehydratase from campylobacter jejuni, variant M405Y, in… · UDP A701 · binds LYS397, ASN433, GLY439, SER440, VAL441, LYS444, PHE445, THR456 and 7 more
• 5C36 · Crystal structure of GTA + UDP-C-Gal + DI · UDP A403 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 4 more
• 5C49 · Crystal structure of GTB + UDP-C-Gal + H-antigen · UDP A404 · binds PHE121, ALA122, ILE123, LYS124, TYR126, ARG188, ASP211, VAL212 and 2 more
• 5DJS · Thermobaculum terrenum O-GlcNAc transferase mutant - K341M · UDP A601 · binds PHE336, ASN337, ARG338, MET341, ILE365, PRO397, MET398, ARG400 and 6 more
• 5DLD · Crystal Structure of a UDP-N-acetylglucosamine 2-epimerase from Burkholderia… · UDP A501 · binds ARG11, PRO12, ILE15, HIS214, ARG215, PRO245, PRO271, GLN272 and 8 more
• 5EJZ · Bacterial Cellulose Synthase Product-Bound State · UDP A921 · binds PRO147, SER148, TYR149, GLU151, ASP180, ALA225, LYS226, ASN229 and 9 more
• 5EKE · Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB (F215A mutant) · UDP A401 · binds PRO10, MET11, TYR12, GLU14, ASP43, ASN71, GLY73, LYS74 and 3 more
• 5ENZ · S. aureus MnaA-UDP co-structure · UDP A401 · binds ARG11, PRO12, ILE15, HIS205, PRO236, PRO262, LEU263, ASP264 and 8 more
• 5EQD · Structure of oxidized UDP-galactopyranose mutase from Mycobacterium smegmatis in complex… · UDP B501 · binds PHE111, PHE150, PHE166, ILE167, TYR170, THR171, GLN174, TRP175 and 9 more
• 5ER9 · Structure of oxidized UDP-galactopyranose mutase from Mycobacterium smegmatis in complex… · UDP A501 · binds PHE111, PHE166, ILE167, TYR170, THR171, GLN174, TRP175, TYR200 and 5 more
• 5F84 · Crystal structure of Drosophila Poglut1 (Rumi) complexed with its glycoprotein product… · UDP A501 · binds PRO191, THR193, ILE200, ARG229, GLY230, SER231, THR233, ARG237 and 11 more
• 5F85 · Crystal structure of Drosophila Poglut1 (Rumi) complexed with its substrate protein (EGF… · UDP A501 · binds PRO191, THR193, ILE200, ARG229, GLY230, SER231, THR233, ARG237 and 7 more
• 5F87 · Crystal structure of Drosophila Poglut1 (Rumi) complexed with UDP · UDP A501 · binds PRO191, THR193, ILE200, ARG229, GLY230, SER231, THR233, ARG237 and 10 more
• 5FV9 · Crystal structure of GalNAc-T2 in complex with compound 16d · UDP A1570 · binds THR143, PHE144, HIS145, ASP176, ARG201, GLY203, LEU204, SER207 and 5 more
• 5GGI · Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in… · UDP A701 · binds ILE307, ALA308, GLY309, ARG311, ASP338, ARG367, VAL368, HIS371 and 9 more
• 5GVV · Crystal structure of the glycosyltransferase GlyE in Streptococcus pneumoniae TIGR4 · UDP A502 · binds ALA11, GLY12, ASP13, TYR16, HIS85, MSE86, THR87, ARG90 and 8 more

Residues it binds most

GLY 459, SER 425, ARG 477, VAL 400, ASP 337, LEU 402, GLU 405, LYS 339, TYR 401, ASN 359 (residue and the binding sites it lines).

Found with

• MN · Manganese (II) ion
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
• GOL · Glycerol
• EDO · 1,2-ethanediol
• MG · Magnesium ion
• SO4 · Sulfate ion
• CL · Chloride ion
• TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
• MAN · alpha-D-mannopyranose
• BGC · beta-D-glucopyranose
• BMA · beta-D-mannopyranose
• GLC · alpha-D-glucopyranose