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Ligand · VHH

VHH · 5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid

VHH, 5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid (C12 H20 N2 O3 S, 272.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
VHH
Formula
C12 H20 N2 O3 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

VHH in 2 structures; the first of them:

  • 3VHH · Crystal structure of DiMe-biotin-avidin complex · VHH A1124 · binds ASN12, LEU14, SER16, TYR33, THR35, VAL37, THR38, ALA39 and 11 more
  • 3VHH · Crystal structure of dime-biotin-avidin complex · VHH A1124 · binds ASN12, LEU14, SER16, TYR33, THR35, VAL37, THR38, ALA39 and 11 more

Residues it binds most

THR 8, SER 8, TRP 8, ASN 8, LEU 8, PHE 8, ALA 8, TYR 8, VAL 8 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • SO4 · Sulfate ion

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