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Ligand · SHM

SHM · Homobiotin

SHM, Homobiotin (C11 H18 N2 O3 S, 258.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SHM
Formula
C11 H18 N2 O3 S
Class
ligand
Structures
4
PDB entries
2

Binding sites

SHM in 4 structures; the first of them:

  • 1LCW · streptavidin-homobiotin complex · SHM A401 · binds ASN23, LEU25, SER27, TYR43, SER45, VAL47, GLY48, ASN49 and 9 more
  • 1LDQ · avidin-homobiotin complex · SHM A402 · binds ASN12, LEU14, SER16, TYR33, THR35, TRP70, PHE72, SER73 and 5 more
  • 1LCW · Streptavidin-homobiotin complex · SHM A401 · binds ASN23, LEU25, SER27, TYR43, SER45, VAL47, GLY48, ASN49 and 9 more
  • 1LDQ · Avidin-homobiotin complex · SHM A402 · binds ASN12, LEU14, SER16, TYR33, THR35, TRP70, PHE72, SER73 and 5 more

Residues it binds most

TRP 8, SER 8, ASN 8, LEU 8, THR 8, ALA 4, PHE 4, TYR 8, ASP 4, GLY 4 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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