MolNFT v1 · #184349 · protein + RNA
Structure of the U2 5' module of the A3'-ssa complex
7ONB: “Structure of the U2 5' module of the A3'-ssa complex”. Electron microscopy, 2 ligands (SJT, ZN). MolNFT v1 #184349 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ONB
- Type
- protein + RNA
- Length
- 2,614 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q15393, Q9BWJ5, O75533, Q7RTV0, Q13435, Q15428, Q12874, Q15427
- Ligands
- SJT, ZN
Structure
electron microscopy · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1190 | — | Q15393 |
| B | — | protein | 67 | — | Q9BWJ5 |
| C | — | protein | 816 | — | O75533 |
| D | — | protein | 81 | — | Q7RTV0 |
| F | — | protein | 21 | — | — |
| G | — | rna | 14 | — | — |
| H | — | rna | 32 | — | — |
| I | — | protein | 181 | — | Q13435 |
| M | — | protein | 47 | — | Q15428 |
| N | — | protein | 97 | — | Q12874 |
| K | — | protein | 68 | — | Q15427 |
Ligands and binding sites
- SJT · spliceostatin A (form II) · ligand · chains C, D
- ZN · Zinc ion · metal · 5 copies · chains D, M, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7ONB · Structure of the U2 5' module of the A3'-SSA complex · the same entry in another collection · chain K against K, TM-score 1.00
- Q7RTV0 · AlphaFold monomer V2.0 prediction for phd finger-like domain- containing protein 5A… · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15393
- Every structure of UniProt Q9BWJ5
- Every structure of UniProt O75533
- Every structure of UniProt Q7RTV0
- Every structure of UniProt Q13435
- Every structure of UniProt Q15428
- Every structure of UniProt Q12874
- Every structure of UniProt Q15427
- Elsewhere: RCSB PDB 7ONB · PDBe 7ONB · UniProt Q15393 · UniProt Q9BWJ5 · UniProt O75533 · UniProt Q7RTV0 · UniProt Q13435 · UniProt Q15428 · UniProt Q12874 · UniProt Q15427
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