MolNFT v1 · #174103 · protein + RNA

In vitro reconstituted 50S-obge-gmppnp-rsfs particle

7BL4: “In vitro reconstituted 50S-obge-gmppnp-rsfs particle”. Electron microscopy, 3 ligands (GNP, MG, ZN). MolNFT v1 #174103 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7BL4
Type: protein + RNA
Length: 6,718 residues
Chains: 33
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A4S5AQC3, P60422, P60438, P60723, P62399, P0AG55, P0AA10, P02413, P0AG44, P0C018, P0A7L3, P0AG48, P61175, P0ADZ0, P60624, P68919, P0A7L8, P0A7M2, P0A7M6, P0AG51, P0A7N4, P0A7N9, P0A7P5, P0ADY3, P0A7K6, P0ADY7, P0A7R1, P0A7M9, P0AAT6, P42641, P0A7Q1
Ligands: GNP, MG, ZN

Structure

electron microscopy · 33 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
g	—	protein	38	—	A0A4S5AQC3
C	—	protein	271	—	P60422
D	—	protein	209	—	P60438
E	—	protein	193	—	P60723
F	—	protein	177	—	P62399
G	—	protein	176	—	P0AG55
J	—	protein	142	—	P0AA10
L	—	protein	144	—	P02413
N	—	protein	120	—	P0AG44
O	—	protein	116	—	P0C018
Q	—	protein	117	—	P0A7L3
R	—	protein	103	—	P0AG48
S	—	protein	110	—	P61175
T	—	protein	93	—	P0ADZ0
U	—	protein	102	—	P60624
V	—	protein	94	—	P68919
W	—	protein	76	—	P0A7L8
X	—	protein	77	—	P0A7M2
Y	—	protein	63	—	P0A7M6
Z	—	protein	58	—	P0AG51
0	—	protein	56	—	P0A7N4
1	—	protein	50	—	P0A7N9
2	—	protein	46	—	P0A7P5
K	—	protein	122	—	P0ADY3
P	—	protein	113	—	P0A7K6
M	—	protein	136	—	P0ADY7
H	—	protein	149	—	P0A7R1
d	—	protein	47	—	P0A7M9
A	—	rna	2897	—	—
B	—	rna	119	—	—
6	—	protein	102	—	P0AAT6
9	—	protein	338	—	P42641
3	—	protein	64	—	P0A7Q1

Ligands and binding sites

GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains 9
MG · Magnesium ion · metal · 6 copies · chains A, 6, 9
ZN · Zinc ion · metal · 2 copies · chains g, d

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7BL4 · in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle · the same entry in another collection · chain D against D, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A4S5AQC3
Every structure of UniProt P60422
Every structure of UniProt P60438
Every structure of UniProt P60723
Every structure of UniProt P62399
Every structure of UniProt P0AG55
Every structure of UniProt P0AA10
Every structure of UniProt P02413
Every structure of UniProt P0AG44
Every structure of UniProt P0C018
Every structure of UniProt P0A7L3
Every structure of UniProt P0AG48
Every structure of UniProt P61175
Every structure of UniProt P0ADZ0
Every structure of UniProt P60624
Every structure of UniProt P68919
Every structure of UniProt P0A7L8
Every structure of UniProt P0A7M2
Every structure of UniProt P0A7M6
Every structure of UniProt P0AG51
Every structure of UniProt P0A7N4
Every structure of UniProt P0A7N9
Every structure of UniProt P0A7P5
Every structure of UniProt P0ADY3
Every structure of UniProt P0A7K6
Every structure of UniProt P0ADY7
Every structure of UniProt P0A7R1
Every structure of UniProt P0A7M9
Every structure of UniProt P0AAT6
Every structure of UniProt P42641
Every structure of UniProt P0A7Q1
Elsewhere: RCSB PDB 7BL4 · PDBe 7BL4 · UniProt A0A4S5AQC3 · UniProt P60422 · UniProt P60438 · UniProt P60723 · UniProt P62399 · UniProt P0AG55 · UniProt P0AA10 · UniProt P02413 · UniProt P0AG44 · UniProt P0C018 · UniProt P0A7L3 · UniProt P0AG48 · UniProt P61175 · UniProt P0ADZ0 · UniProt P60624 · UniProt P68919 · UniProt P0A7L8 · UniProt P0A7M2 · UniProt P0A7M6 · UniProt P0AG51 · UniProt P0A7N4 · UniProt P0A7N9 · UniProt P0A7P5 · UniProt P0ADY3 · UniProt P0A7K6 · UniProt P0ADY7 · UniProt P0A7R1 · UniProt P0A7M9 · UniProt P0AAT6 · UniProt P42641 · UniProt P0A7Q1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.