UniProt P68919
50S ribosomal protein L25 (P68919)
50S ribosomal protein L25 (UniProt P68919): 208 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 20 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P68919
- Protein
- 50S ribosomal protein L25
- Experimental structures
- 208
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 20 · 20 records with a druggable one
Structures
209 records of P68919 in the MolNFT archive: 208 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1B75 | Solution structure of ribosomal protein L25 from escherichia COLI | solution nmr | A | — | — |
| 1B75 | Solution structure of ribosomal protein L25 from escherichia COLI | solution nmr | A | — | — |
| 1D6K | NMR solution structure of the 5S rRNA E-LOOP/L25 complex | solution nmr | A | — | — |
| 1D6K | NMR solution structure of the 5S rRNA E-LOOP/L25 complex | solution nmr | A | — | — |
| 1DFU | Crystal structure of E.COLI ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8 a… | x-ray diffraction | P | — | — |
| 1DFU | Crystal structure of E.COLI ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8 a… | x-ray diffraction | P | — | — |
| 2J28 | Model of E. COLI srp bound to 70S rncs | electron microscopy | V | — | — |
| 2J28 | Model of E. COLI srp bound to 70S rncs | electron microscopy | V | — | — |
| 2RDO | 50S subunit with EF-G(GDPNP) and RRF bound | electron microscopy | V | — | — |
| 2RDO | 50S subunit with ef-G(GDPNP) and rrf bound | electron microscopy | V | — | — |
| 3BBX | The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | electron microscopy | V | — | — |
| 3BBX | The HSP15 protein fitted into the low resolution cryo-EM MAP of the 50S.NC-TRNA.HSP15 complex | electron microscopy | V | — | — |
| 3J5L | Structure of the E. coli 50S subunit with ErmBL nascent chain | electron microscopy | V | — | — |
| 3J5L | Structure of the E. COLI 50S subunit with ermbl nascent chain | electron microscopy | V | — | — |
| 3J7Z | Structure of the E. coli 50S subunit with ErmCL nascent chain | electron microscopy | V | — | — |
| 3J7Z | Structure of the E. COLI 50S subunit with ermcl nascent chain | electron microscopy | V | — | — |
| 3J9Y | Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome | electron microscopy | V | — | — |
| 3J9Z | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | electron microscopy | LT | — | — |
| 3JA1 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | electron microscopy | LX | — | — |
| 3JBV | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | electron microscopy | w | — | — |
| 3JCD | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | electron microscopy | V | — | — |
| 3JCE | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | electron microscopy | V | — | — |
| 3JCJ | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | electron microscopy | U | — | — |
| 3JCN | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association… | electron microscopy | V | — | — |
| 4CSU | Cryo-EM structures of the 50S ribosome subunit bound with ObgE | electron microscopy | W | — | — |
| 4CSU | Cryo-EM structures of the 50S ribosome subunit bound with obge | electron microscopy | W | — | — |
| 4U1U | Crystal structure of the E. coli ribosome bound to quinupristin. | x-ray diffraction | BV, DV | — | — |
| 4U1V | Crystal structure of the E. coli ribosome bound to linopristin. | x-ray diffraction | BV, DV | — | — |
| 4U20 | Crystal structure of the E. coli ribosome bound to flopristin. | x-ray diffraction | BV, DV | — | — |
| 4U24 | Crystal structure of the E. coli ribosome bound to dalfopristin. | x-ray diffraction | BV, DV | — | — |
| 4U25 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | x-ray diffraction | BV, DV | — | — |
| 4U26 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | x-ray diffraction | BV, DV | — | — |
| 4U27 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | x-ray diffraction | BV, DV | — | — |
| 4V47 | Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM… | electron microscopy | AT | — | — |
| 4V48 | Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM… | electron microscopy | AT | — | — |
| 4V4H | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic… | x-ray diffraction | BV, DV | — | — |
| 4V4Q | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | x-ray diffraction | BV, DV | — | — |
| 4V4V | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and… | electron microscopy | BT | — | — |
| 4V4W | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and… | electron microscopy | BT | — | — |
| 4V50 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | x-ray diffraction | BV, DV | — | — |
| 4V52 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | x-ray diffraction | BV, DV | — | — |
| 4V53 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. | x-ray diffraction | BV, DV | — | — |
| 4V54 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome… | x-ray diffraction | BV, DV | — | — |
| 4V55 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and… | x-ray diffraction | BV, DV | — | — |
| 4V56 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | x-ray diffraction | BV, DV | — | — |
| 4V57 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and… | x-ray diffraction | BV, DV | — | — |
| 4V5B | Structure of PDF binding helix in complex with the ribosome. | x-ray diffraction | AV, CV | — | — |
| 4V5H | E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. | electron microscopy | BW | — | — |
| 4V5Y | Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and… | x-ray diffraction | BV, DV | — | — |
| 4V64 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | x-ray diffraction | BV, DV | — | — |
| 4V65 | Structure of the E. coli ribosome in the Pre-accommodation state | electron microscopy | BC | — | — |
| 4V66 | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | electron microscopy | BC | — | — |
| 4V69 | Ternary complex-bound E.coli 70S ribosome. | electron microscopy | BV | — | — |
| 4V6C | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | x-ray diffraction | BV, DV | — | — |
| 4V6D | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | x-ray diffraction | BV, DV | — | — |
| 4V6E | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | x-ray diffraction | BV, DV | — | — |
| 4V6K | Structural insights into cognate vs. near-cognate discrimination during decoding. | electron microscopy | AW | — | — |
| 4V6L | Structural insights into cognate vs. near-cognate discrimination during decoding. | electron microscopy | BW | — | — |
| 4V6M | Structure of the ribosome-SecYE complex in the membrane environment | electron microscopy | BV | — | — |
| 4V6N | Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the… | electron microscopy | AX | — | — |
149 records more on the page itself.
Ligands
Experiment against prediction
- 4YBB chain DW against the predicted model P68919: TM-score 0.99, RMSD 0.33 Å
- 5KCR chain 1Z against the predicted model P68919: TM-score 0.99, RMSD 0.33 Å
- 5J7L chain DW against the predicted model P68919: TM-score 0.99, RMSD 0.34 Å
- 5J7L chain CW against the predicted model P68919: TM-score 0.99, RMSD 0.34 Å
- 8QOA chain u against the predicted model P68919: TM-score 0.99, RMSD 0.35 Å
- 7N30 chain LY against the predicted model P68919: TM-score 0.99, RMSD 0.36 Å
- 8CEU chain u against the predicted model P68919: TM-score 0.99, RMSD 0.36 Å
- 9CG5 chain u against the predicted model P68919: TM-score 0.99, RMSD 0.36 Å
- 6ZTP chain BW against the predicted model P68919: TM-score 0.99, RMSD 0.37 Å
- 8PVA chain u against the predicted model P68919: TM-score 0.99, RMSD 0.37 Å
Elsewhere
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