MolNFT v1 · #162949 · protein + DNA
Structure of the core tfiih-xpa-DNA complex
6RO4: “Structure of the core tfiih-xpa-DNA complex”. Electron microscopy, 2 ligands (SF4, ZN). MolNFT v1 #162949 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RO4
- Type
- protein + DNA
- Length
- 2,396 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P19447, Q6ZYL4, P18074, Q13889, Q13888, Q92759, P23025
- Ligands
- SF4, ZN
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| J | — | dna | 19 | — | — |
| K | — | dna | 28 | — | — |
| A | — | protein | 575 | — | P19447 |
| F | — | protein | 62 | — | Q6ZYL4 |
| B | — | protein | 675 | — | P18074 |
| E | — | protein | 237 | — | Q13889 |
| D | — | protein | 280 | — | Q13888 |
| C | — | protein | 386 | — | Q92759 |
| G | — | protein | 134 | — | P23025 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RO4 · Structure of the core TFIIH-XPA-DNA complex · the same entry in another collection · chain G against G, TM-score 1.00
- P18074 · AlphaFold monomer V2.0 prediction for general transcription and DNA repair factor iih… · a predicted model of the same protein · chain B against A, TM-score 0.98
- Q13889 · AlphaFold monomer V2.0 prediction for general transcription factor iih subunit 3 (Q13889) · a predicted model of the same protein · chain E against A, TM-score 0.94
- P19447 · AlphaFold monomer V2.0 prediction for general transcription and DNA repair factor iih… · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19447
- Every structure of UniProt Q6ZYL4
- Every structure of UniProt P18074
- Every structure of UniProt Q13889
- Every structure of UniProt Q13888
- Every structure of UniProt Q92759
- Every structure of UniProt P23025
- Elsewhere: RCSB PDB 6RO4 · PDBe 6RO4 · UniProt P19447 · UniProt Q6ZYL4 · UniProt P18074 · UniProt Q13889 · UniProt Q13888 · UniProt Q92759 · UniProt P23025
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