GL1X · GenesisL1 explorer

MolNFT v1 · #125634 · protein

Native human 20S proteasome in mg-acetate at 2.2 ångström

5LEX: “Native human 20S proteasome in mg-acetate at 2.2 ångström”. X-ray diffraction, 2 ligands (MG, K). MolNFT v1 #125634 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5LEX
Type
protein
Length
6,225 residues
Chains
28
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P25787, P25789, O14818, P28066, P25786, P25788, P60900, Q99436, P49720, P49721, P28074, P20618, P28070, P28072
Ligands
MG, K

Structure

x-ray diffraction · 21 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, O—protein230—P25787
B—protein248—P25789
C—protein237—O14818
D, R—protein233—P28066
E—protein234—P25786
F—protein239—P25788
G—protein244—P60900
H, V—protein220—Q99436
I, W—protein204—P49720
J, X—protein196—P49721
K—protein200—P28074
L, Z—protein213—P20618
M, a—protein216—P28070
N—protein202—P28072
P—protein247—P25789
Q—protein234—O14818
S—protein236—P25786
T—protein240—P25788
U—protein238—P60900
Y—protein199—P28074
b—protein203—P28072

Ligands and binding sites

  • MG · Magnesium ion · metal · 9 copies · chains H, Z, I, Y, J, K, W, L, V, b, X
  • K · Potassium ion · metal · 6 copies · chains G, L, N, U, Z, b
  • 1PE · Pentaethylene glycol · additive · 9 copies · chains H, I, J, K, L, M, V, b, G, N, W, X, R, Y, Z, a, U

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5LEX · Native human 20S proteasome in Mg-Acetate at 2.2 Angstrom · the same entry in another collection · chain K against K, TM-score 1.00

Analyse

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