Research workbench
Cryoem structure of the SLC38A9-raga-ragc-ragulator complex in the post-gap state
Analyse Cryoem structure of the SLC38A9-raga-ragc-ragulator complex in the post-gap… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WJ3
- Type
- protein
- Length
- 1,168 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6IAA8, Q9Y2Q5, Q9UHA4, Q0VGL1, A0A0C4DGV4, Q7L523, Q9HB90, Q8NBW4
- Ligands
- GDP, U3J
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 96 | — | Q6IAA8 |
| B | — | protein | 120 | — | Q9Y2Q5 |
| C | — | protein | 119 | — | Q9UHA4 |
| D | — | protein | 94 | — | Q0VGL1 |
| E | — | protein | 91 | — | A0A0C4DGV4 |
| F | — | protein | 281 | — | Q7L523 |
| G | — | protein | 308 | — | Q9HB90 |
| H | — | protein | 59 | — | Q8NBW4 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains F, H
- U3J · xanthosine diphosphate · ligand · chains G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WJ3 · CryoEM structure of the SLC38A9-RagA-RagC-Ragulator complex in the post-GAP state · the same entry in another collection · chain H against H, TM-score 1.00
- Q9HB90 · AlphaFold monomer V2.0 prediction for RAS-related GTP-binding protein C (Q9HB90) · a predicted model of the same protein · chain G against A, TM-score 0.97
- Q9UHA4 · AlphaFold monomer V2.0 prediction for ragulator complex protein LAMTOR3 (Q9UHA4) · a predicted model of the same protein · chain C against A, TM-score 0.94
- Q9Y2Q5 · AlphaFold monomer V2.0 prediction for ragulator complex protein LAMTOR2 (Q9Y2Q5) · a predicted model of the same protein · chain B against A, TM-score 0.93
- Q0VGL1 · AlphaFold monomer V2.0 prediction for ragulator complex protein LAMTOR4 (Q0VGL1) · a predicted model of the same protein · chain D against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6IAA8
- Every structure of UniProt Q9Y2Q5
- Every structure of UniProt Q9UHA4
- Every structure of UniProt Q0VGL1
- Every structure of UniProt A0A0C4DGV4
- Every structure of UniProt Q7L523
- Every structure of UniProt Q9HB90
- Every structure of UniProt Q8NBW4
- Elsewhere: RCSB PDB 6WJ3 · PDBe 6WJ3 · UniProt Q6IAA8 · UniProt Q9Y2Q5 · UniProt Q9UHA4 · UniProt Q0VGL1 · UniProt A0A0C4DGV4 · UniProt Q7L523 · UniProt Q9HB90 · UniProt Q8NBW4
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