Ligand · GDP
GDP · Guanosine-5'-diphosphate
GDP, Guanosine-5'-diphosphate (C10 H15 N5 O11 P2, 443.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1,712 records (1,192 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…
- Component
- GDP
- Formula
- C10 H15 N5 O11 P2
- Class
- ligand
- Structures
- 1,712
- PDB entries
- 1,192
Binding sites
GDP in 1,712 structures; the first of them:
- 4WTE · Crystal structure of HCV NS5B genotype 2A jfh-1 isolate with S15G E86Q E87Q C223H V321I… · GDP A605 · binds C2, A3, U8, ARG48, LYS141, ARG158, ILE160, ASP220 and 11 more
- 4X1K · Discovery of cytotoxic Dolastatin 10 analogs with N-terminal modifications · GDP B501 · binds GLY10, GLN11, CYS12, GLN15, ILE16, ASP69, ALA99, ASN101 and 16 more
- 4Z54 · High Resolution Human Septin3 GTPase domain with alpha-zero helix in complex with GDP · GDP A401 · binds GLN69, SER70, GLY71, LEU72, GLY73, LYS74, SER75, THR76 and 13 more
- 4ZCL · Crystal Structure of Escherichia coli GTPase BipA/TypA Complexed with GDP · GDP A1003 · binds HIS13, VAL14, ASP15, HIS16, GLY17, LYS18, THR19, THR20 and 6 more
- 4ZHQ · Crystal structure of Tubulin-Stathmin-TTL-MMAE Complex · GDP B501 · binds ALA9, GLY10, GLN11, CYS12, GLN15, ILE16, ASP69, ASN101 and 17 more
- 4ZI7 · Crystal structure of tubulin-stathmin-ttl-HTI286 complex · GDP B501 · binds GLY10, GLN11, CYS12, GLN15, ILE16, ASP69, ASN101, SER140 and 15 more
- 4ZKD · Crystal structure of the S. cerevisiae Ski7 GTPase-like domain, bound to GDP and… · GDP A802 · binds ASP275, THR276, ASN277, ALA278, GLY279, LYS280, SER281, THR282 and 13 more
- 4ZOL · Crystal Structure of Tubulin-Stathmin-TTL-Tubulysin M Complex · GDP B501 · binds GLY10, GLN11, CYS12, GLN15, ILE16, ASP69, ASN101, SER140 and 16 more
- 5A07 · X-ray structure of the mannosyltransferase Ktr4p from S. cerevisiae in complex with GDP · GDP A500 · binds LEU140, VAL141, ARG142, ASP145, LEU171, ASN172, ASP173, TRP204 and 8 more
- 5A9X · Structure of GDP bound BipA · GDP A1603 · binds HIS16, GLY17, LYS18, THR19, THR20, LYS50, ASN128, LYS129 and 7 more
- 5AJ3 · Structure of the small subunit of the mammalian mitoribosome · GDP g500 · binds PRO83, ARG85, PHE86, LEU98, MET99, ARG101, GLU128, LYS129 and 11 more
- 5BMV · CRYSTAL STRUCTURE OF TUBULIN-STATHMIN-TTL-Vinblastine COMPLEX · GDP B501 · binds GLY10, GLN11, CYS12, GLN15, ILE16, ASP69, ASN101, SER140 and 16 more
- 5C2J · Complex structure of the GAP domain of MgcRacGAP and Cdc42 · GDP B501 · binds ARG385, ASP11, GLY12, ALA13, VAL14, GLY15, LYS16, THR17 and 12 more
- 5C2K · Crystal structure of the fusion protein linked by RhoA and the GAP domain of MgcRacGAP · GDP A503 · binds ASP13, GLY14, ALA15, CYS16, GLY17, LYS18, THR19, CYS20 and 12 more
- 5C4G · Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta… · GDP B302 · binds ASP19, SER20, GLY21, VAL22, GLY23, LYS24, SER25, ASN26 and 15 more
- 5C4M · RhoA GDP with novel switch II conformation · GDP A202 · binds ASP13, GLY14, ALA15, CYS16, GLY17, LYS18, THR19, CYS20 and 9 more
- 5C8Y · Crystal structure of T2R-TTL-Plinabulin complex · GDP B501 · binds GLY10, GLN11, CYS12, GLN15, ILE16, ALA97, ASN99, SER138 and 15 more
- 5CA0 · Crystal structure of T2R-TTL-Lexibulin complex · GDP B501 · binds GLY10, GLN11, CYS12, GLN15, ASN99, SER138, GLY140, GLY141 and 13 more
- 5CA8 · Structures of the yeast dynamin-like GTPase Sey1p in complex with GDP · GDP A702 · binds SER66, GLN67, SER68, THR69, GLY70, LYS71, SER72, THR73 and 11 more
- 5CA9 · Structures of the candida albicans sey1p GTPase in complex with GDPAlF4- · GDP A703 · binds SER66, GLN67, SER68, THR69, GLY70, LYS71, SER72, THR73 and 11 more
- 5CB4 · Crystal structure of T2R-TTL-Tivantinib complex · GDP B501 · binds GLY10, GLN11, CYS12, GLN15, ILE16, ASP67, ALA97, ASN99 and 17 more
- 5CIQ · Ran GDP wild type tetragonal crystal form · GDP A301 · binds ASP18, GLY19, GLY20, THR21, GLY22, LYS23, THR24, THR25 and 8 more
- 5CIT · Ran GDP wild type monoclinic crystal form · GDP A301 · binds ASP18, GLY19, GLY20, THR21, GLY22, LYS23, THR24, THR25 and 9 more
- 5CIW · Ran GDP Y39A mutant monoclinic crystal form · GDP A301 · binds ASP18, GLY19, GLY20, THR21, GLY22, LYS23, THR24, THR25 and 8 more
- 5CYO · High resolution Septin 9 GTPase domain in complex with GDP · GDP A301 · binds GLN31, SER32, GLY33, LEU34, GLY35, LYS36, SER37, THR38 and 13 more
Residues it binds most
GLY 4254, ASN 3863, SER 3981, GLN 2822, ASP 3666, THR 3553, LEU 3067, VAL 2556, LYS 1743, ALA 2164 (residue and the binding sites it lines).
Found with
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