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Ligand · U3J

U3J · xanthosine diphosphate

U3J, xanthosine diphosphate (C10 H14 N4 O12 P2, 444.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
U3J
Formula
C10 H14 N4 O12 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

U3J in 2 structures; the first of them:

  • 6WJ3 · CryoEM structure of the SLC38A9-RagA-RagC-Ragulator complex in the post-GAP state · U3J G500 · binds ARG71, SER72, GLY73, LYS74, SER75, SER76, THR90, LEU91 and 7 more
  • 6WJ3 · Cryoem structure of the SLC38A9-raga-ragc-ragulator complex in the post-gap state · U3J G500 · binds ARG71, GLY73, LYS74, SER75, SER76, THR90, LEU91, LEU93 and 5 more

Residues it binds most

SER 2, LEU 2, LYS 2, THR 2, ARG 2, ASN 2, GLY 2, HIS 2, ILE 2, TYR 2 (residue and the binding sites it lines).

Found with

  • GDP · Guanosine-5'-diphosphate

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